SASDC63

Fowlpox Virus FPV039 antiapoptotic Bcl-2 viral protein in complex with BaK BH3 peptide (FPV039:BAK)

数据类型:SASBDB 实验数据 状态:Published 曲线类型:Single concentration 最后更新:2019-12-06T13:07:15.624532+01:00
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1. 样品、组分与实验条件 Sample & Experiment

样品 1 · Fowlpox Virus FPV039 antiapoptotic Bcl-2 viral protein in complex with BaK BH3 peptide (FPV039:BAK)

浓度0.31 – 7.35 缓冲液 / pH20 mM trisodium citrate pH, 200 mM NaCl / 6.0
实验温度20.0 设备 / 束线Australian Synchrotron / SAXS/WAXS
波长— nm曝光1.0 s × 30

分子组分

组分类型 / 物种UniProt 与构建体寡聚状态分子量
Bcl-2-like protein FPV039
查看序列
MASSNMKDETYYIALNMIQNYIIEYNTNKPRKSFVIDSISYDVLKAACKSVIKTNYNEFDIIISRNIDFNVIVTQVLEDKINWGRIITIIAFCAYYSKKVKQDTSPQYYDGIISEAITDAILSKYRSWFIDQDYWNGIRIYKN
proteinFowlpox virusQ9J5G41–143monomer分子数 116.823 kDa
Uncharacterized protein (BAK1)
查看序列
LGSTGSQVGRRLAIIGDDINKRYDAE
proteinGallus gallusQ5F40472–97monomer分子数 12.805 kDa

实验曲线

曲线点数 / 列q 范围误差质量负强度点来源文件
1833[3]0.0106358–0.618502 1/A含误差列缺失 00sasbdb/entries/63/sasdc63/source/SASDC63.dat
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2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
i0Guinier0.1040310.0002—
mwExperimental17.9—kDa
rgGuinier1.960.006Å

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

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3. 来源拟合与模型 Source Fits & Models

该条目没有来源拟合记录。

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4. 来源文件索引 Source Files

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5. 实验说明与论文 Experiment & Publication

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6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;未声明的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称20 mM trisodium citrate pH, 200 mM NaCl缓冲液浓度—
pH6.0添加剂—
缓冲液说明—
纯度测定方法—消光系数—
吸收值—散射对比度—
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2015-10-02储存 / 测量温度20.0 / 20.0
曝光时间1.0帧数30
波长—样品-探测器距离1.6
光源X-ray synchrotron探测器Pilatus 1M
机构 / 束线Australian Synchrotron / SAXS/WAXS · Melbourne, Australia
q 范围0.106 – 6.185样品体积 / 流速— / —

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图

可下载文件

类别文件状态大小校验值下载与查看
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pddfsasbdb/entries/63/sasdc63/source/SASDC63.outnot_listed——下载查看原文件
sascifsasbdb/entries/63/sasdc63/source/SASDC63.sascifdownloaded49781b05b15f2feabc727a4344fa4c664bd4f0cf8925163fe2d770347289662ae1036下载查看原文件源站
summarysasbdb/entries/63/sasdc63/source/summary.jsondownloaded7068c85b7156bc155934c526e336136295973a53865750925dd2dc017e46de17f614下载查看原文件源站
curve:来源记录
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full_entry_zip:来源记录与 ZIP 内部目录(1 项)
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pddf:来源记录
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sascif:来源记录
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summary:来源记录
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全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:151 个字段值
字段路径原始值
codeSASDC63
statusPublished
type_of_curveSingle concentration
angular_unit1/A
project.titleStructural basis of apoptosis inhibition by the fowlpox virus protein FPV039.
project.publication.titleStructural basis of apoptosis inhibition by the fowlpox virus protein FPV039.
project.publication.author_listAnasir MI, Caria S, Skinner MA, Kvansakul M
project.publication.journalJ Biol Chem
project.publication.doi10.1074/jbc.M116.768879
project.publication.pmid28411240
project.publication.published_date2017 Jun 2
project.statusreleased
project.submitted_date2017-04-28
project.released_date2017-04-29
pddf_datanull
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pddf_plotnull
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experiment.instrument.detector.namePilatus 1M
experiment.instrument.detector.resolution172.0
experiment.instrument.nameAustralian Synchrotron
experiment.instrument.cityMelbourne
experiment.instrument.countryAustralia
experiment.instrument.beamline_nameSAXS/WAXS
experiment.instrument.beam_geometryPoint
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourceTrue
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
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experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameBcl-2-like protein FPV039
experiment.sample.molecule[0].short_nameFPV039
experiment.sample.molecule[0].sequenceMASSNMKDETYYIALNMIQNYIIEYNTNKPRKSFVIDSISYDVLKAACKSVIKTNYNEFDIIISRNIDFNVIVTQVLEDKINWGRIITIIAFCAYYSKKVKQDTSPQYYDGIISEAITDAILSKYRSWFIDQDYWNGIRIYKN
experiment.sample.molecule[0].organismFowlpox virus
experiment.sample.molecule[0].uniprot_codeQ9J5G4
experiment.sample.molecule[0].uniprot_range_first1
experiment.sample.molecule[0].uniprot_range_last143
experiment.sample.molecule[0].oligomerizationmonomer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequenceMASSNMKDETYYIALNMIQNYIIEYNTNKPRKSFVIDSISYDVLKAACKSVIKTNYNEFD IIISRNIDFNVIVTQVLEDKINWGRIITIIAFCAYYSKKVKQDTSPQYYDGIISEAITDA ILSKYRSWFIDQDYWNGIRIYKNYSYIFNTASYCIFTASLIIASLAVFKICSFYM
experiment.sample.molecule[0].mw16.823
experiment.sample.molecule[0].total_mw16.823
experiment.sample.molecule[0].number_molecules1
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionnull
experiment.sample.molecule[1].long_nameUncharacterized protein (BAK1)
experiment.sample.molecule[1].short_nameBak
experiment.sample.molecule[1].sequenceLGSTGSQVGRRLAIIGDDINKRYDAE
experiment.sample.molecule[1].organismGallus gallus
experiment.sample.molecule[1].uniprot_codeQ5F404
experiment.sample.molecule[1].uniprot_range_first72
experiment.sample.molecule[1].uniprot_range_last97
experiment.sample.molecule[1].oligomerizationmonomer
experiment.sample.molecule[1].molecular_typeprotein
experiment.sample.molecule[1].uniprot_sequenceMEGNEGDPPGAHRRRDSHGRRPSREINAEDQVAQETEEVFRSYTFYRYQQEREEGGAEVP MDPEIMEIQQELGSTGSQVGRRLAIIGDDINKRYDAEFRHMLKSLQPTKENAYEYFTTIA SSLFDSGINWGRVIALLGFGYCMAIHVYQQGITGFLRRIARYVTEFMLRNRIARWIAQQG GWVAALDLDNVYMKYMLVVLALVMVGHLVVRRFFRP
experiment.sample.molecule[1].mw2.805
experiment.sample.molecule[1].total_mw2.805
experiment.sample.molecule[1].number_molecules1
experiment.sample.molecule[1].complex_stateFalse
experiment.sample.molecule[1].deuterationnull
experiment.sample.molecule[1].molecule_sourcebiological
experiment.sample.molecule[1].molecule_descriptionnull
experiment.sample.buffer.name20 mM trisodium citrate pH, 200 mM NaCl
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph6.0
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameFowlpox Virus FPV039 antiapoptotic Bcl-2 viral protein in complex with BaK BH3 peptide (FPV039:BAK)
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_nameANSTO
experiment.contributor[0].affiliation[0].addressKirrawee DC, NSW 2232, Australia
experiment.contributor[0].affiliation[0].full_nameAustralian Nuclear Science and Technology Organisation
experiment.contributor[0].affiliation[0].webpage
experiment.contributor[0].contributor_nameSofia
experiment.contributor[0].contributor_surnameCaria
experiment.contributor[0].orcid
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2015-10-02
experiment.storage_temperature20.0
experiment.cell_temperature20.0
experiment.exposure_time1.0
experiment.number_of_frames30
experiment.wavelengthnull
experiment.sample_detector_distance1.6
experiment.concentration_min0.31
experiment.concentration_max7.35
experiment.sample_volumenull
experiment.flow_ratenull
experiment.s_min0.106
experiment.s_max6.185
experiment.total_exposure_timenull
experiment.seccolumnnull
fits[]
estimated_volume_methodnull
pddf_softwarenull
pddf_software_versionnull
i0_calibration_standardnull
descriptionnull
experiment_descriptionSynchrotron SAXS data from solutions of Fowlpox Virus FPV039 antiapoptotic Bcl-2 viral protein in complex with BaK BH3 peptide in 20 mM trisodium citrate, 200 mM NaCl, pH 6.0 were collected on the SAXS/WAXS beam line at the Australian Synchrotron (Melbourne, Australia) using a Pilatus 1M detector at a sample-detector distance of 1.6 m (I(s) vs s, where s = 4πsinθ/λ and 2θ is the scattering angle). Solute concentrations ranging between 0.31 to 7.35 mg/ml were measured. 30 successive 1 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted. The low angle data collected were obtained from a single concentration scattering curve (7.35 mg/ml scattering data).
tags[]
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pddf_i0null
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guinier_i00.104031
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pddf_rgnull
pddf_rg_errornull
guinier_rg1.96
guinier_rg_error0.006
pddf_dmaxnull
pddf_dmax_errornull
porod_volumenull
porod_volume_errornull
estimated_volumenull
estimated_volume_errornull
guinier_point_first38
guinier_point_last70
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDC63_datloglog_img.png
symmetrynull
last_modified2019-12-06T13:07:15.624532+01:00
bragg_peak[]
manifest.json:33 个字段值
字段路径原始值
codeSASDC63
statussuccess
started_at2026-08-11T13:53:16.338675+00:00
finished_at2026-08-11T13:53:22.281354+00:00
source_last_modified2019-12-06T13:07:15.624532+01:00
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查看完整 summary.json 原文
{
  "code": "SASDC63",
  "status": "Published",
  "type_of_curve": "Single concentration",
  "angular_unit": "1/A",
  "project": {
    "title": "Structural basis of apoptosis inhibition by the fowlpox virus protein FPV039.",
    "publication": {
      "title": "Structural basis of apoptosis inhibition by the fowlpox virus protein FPV039.",
      "author_list": "Anasir MI, Caria S, Skinner MA, Kvansakul M",
      "journal": "J Biol Chem",
      "doi": "10.1074/jbc.M116.768879",
      "pmid": "28411240",
      "published_date": "2017 Jun 2"
    },
    "status": "released",
    "submitted_date": "2017-04-28",
    "released_date": "2017-04-29"
  },
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  "experiment_description": "Synchrotron SAXS data from solutions of Fowlpox Virus FPV039 antiapoptotic Bcl-2 viral protein in complex with BaK BH3 peptide in 20 mM trisodium citrate, 200 mM NaCl, pH 6.0 were collected on the SAXS/WAXS beam line at the Australian Synchrotron (Melbourne, Australia) using a Pilatus 1M detector at a sample-detector distance of 1.6 m (I(s) vs s, where s = 4πsinθ/λ and 2θ is the scattering angle). Solute concentrations ranging between 0.31 to 7.35 mg/ml were measured. 30 successive 1 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted. The low angle data collected were obtained from a single concentration scattering curve (7.35 mg/ml scattering data).",
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  "guinier_point_last": 70,
  "pddf_point_first": null,
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  "i0_calibration_standard_data": null,
  "intensities_log_log_plot": "SASDC63_datloglog_img.png",
  "symmetry": null,
  "last_modified": "2019-12-06T13:07:15.624532+01:00",
  "bragg_peak": []
}
查看完整 manifest.json 原文
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