查看完整 summary.json 原文
{
"code": "SASDDN6",
"status": "Published",
"type_of_curve": "Single concentration",
"angular_unit": "1/A",
"project": {
"title": "Human stress-inducible Hsp70 has a high propensity to form ATP-dependent antiparallel dimers that are differentially regulated by co-chaperone binding.",
"publication": {
"title": "Human stress-inducible Hsp70 has a high propensity to form ATP-dependent antiparallel dimers that are differentially regulated by co-chaperone binding.",
"author_list": "Trcka F, Durech M, Vankova P, Chmelik J, Martinkova V, Hausner J, Kadek A, Marcoux J, Klumpler T, Vojtesek B, Muller P, Man P",
"journal": "Mol Cell Proteomics",
"doi": "10.1074/mcp.RA118.001044",
"pmid": "30459217",
"published_date": "2018 Nov 20"
},
"status": "released",
"submitted_date": "2018-05-17",
"released_date": "2018-11-30"
},
"pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDDN6.out",
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"experiment": {
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"name": "Pilatus 100K",
"resolution": 172.0
},
"name": "CEITEC",
"city": "Brno",
"country": "Czech Republic",
"beamline_name": "Rigaku BioSAXS-1000",
"beam_geometry": "",
"type_of_source": "X-ray in house",
"point_source": null,
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},
"sample": {
"molecule": [
{
"long_name": "Heat shock 70 kDa protein 1",
"short_name": "HSPA1A_T204A",
"sequence": "MSYYHHHHHHLESTSLYKKAGFGSENLYFQSMAKAAAIGI\r\nDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTER\r\nLIGDAAKNQVALNPQNTVFDAKRLIGRKFGDPVVQSDMKH\r\nWPFQVINDGDKPKVQVSYKGETKAFYPEEISSMVLTKMKE\r\nIAEAYLGYPVTNAVITVPAYFNDSQRQATKDAGVIAGLNV\r\nLRIINEPTAAAIAYGLDRTGKGERNVLIFDLGGGAFDVSI\r\nLTIDDGIFEVKATAGDTHLGGEDFDNRLVNHFVEEFKRKH\r\nKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFE\r\nGIDFYTSITRARFEELCSDLFRSTLEPVEKALRDAKLDKA\r\nQIHDLVLVGGSTRIPKVQKLLQDFFNGRDLNKSINPDEAV\r\nAYGAAVQAAILMGDKSENVQDLLLLDVAPLSLGLETAGGV\r\nMTALIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAM\r\nTKDNNLLGRFELSGIPPAPRGVPQIEVTFDIDANGILNVT\r\nATDKSTGKANKITITNDKGRLSKEEIERMVQEAEKYKAED\r\nEVQRERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKK\r\nVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISG\r\nLYQGAGGPGPGGFGAQGPKGGSGSGPTIEEVD",
"organism": "Homo sapiens",
"uniprot_code": "P0DMV8",
"uniprot_range_first": null,
"uniprot_range_last": null,
"oligomerization": "dimer",
"molecular_type": "protein",
"uniprot_sequence": "MAKAAAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA\nLNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYKGETKAFYPEEIS\nSMVLTKMKEIAEAYLGYPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAA\nIAYGLDRTGKGERNVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVNH\nFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTSITRA\nRFEELCSDLFRSTLEPVEKALRDAKLDKAQIHDLVLVGGSTRIPKVQKLLQDFFNGRDLN\nKSINPDEAVAYGAAVQAAILMGDKSENVQDLLLLDVAPLSLGLETAGGVMTALIKRNSTI\nPTKQTQIFTTYSDNQPGVLIQVYEGERAMTKDNNLLGRFELSGIPPAPRGVPQIEVTFDI\nDANGILNVTATDKSTGKANKITITNDKGRLSKEEIERMVQEAEKYKAEDEVQRERVSAKN\nALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELE\nQVCNPIISGLYQGAGGPGPGGFGAQGPKGGSGSGPTIEEVD",
"mw": 73.74,
"total_mw": 147.48,
"number_molecules": 2,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": null
}
],
"buffer": {
"name": "50mM HEPES, 150mM KCH3COO, 2mM MgCl2",
"concentration_unit": null,
"comment": null,
"additive": null,
"concentration": null,
"pka": null,
"ph": 7.5,
"deuteration": null
},
"purity_method": null,
"name": "Human stress-inducible heat shock 70 kDa protein 1, Hsp70 (Hspa1a) T204A mutant dimer, in the presence of ATP",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": null,
"address": null,
"full_name": "CEITEC - Central European Institute of Technology, Masaryk University",
"webpage": "https://www.ceitec.eu/"
}
],
"contributor_name": "Tomas",
"contributor_surname": "Klumpler",
"orcid": null
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2018-02-20",
"storage_temperature": 4.0,
"cell_temperature": 4.0,
"exposure_time": 3600.0,
"number_of_frames": null,
"wavelength": 0.154,
"sample_detector_distance": 0.48,
"concentration_min": null,
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"s_min": 0.138,
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},
"fits": [
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"software": "MODELLER",
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"type_of_model": "atomic",
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"model_data": "https://www.sasbdb.org/media/pdb_file/SASDDN6_fit1_model1.pdb",
"model_mw": 148.5,
"bead_radius": null,
"log": null,
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"comment": null,
"user": 195
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDDN6_fit1_fit_img.png",
"software": "CRYSOL",
"chi_square_value": 1.15,
"p_value": 0.489949,
"fit_residual_plot": "SASDDN6_fit1_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDDN6_fit1.fit",
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}
],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
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"i0_calibration_standard": null,
"description": null,
"experiment_description": "SAXS data from solutions of human stress-induced heat shock 70 kDa protein 1 ,Hsp70, (Hspa1a T204A mutant), with ATP in 50mM HEPES; 150mM KCH3COO; 2mM MgCl2, pH 7.5, were collected on a Rigaku BioSAXS-1000 instrument at CEITEC (Brno, Czech Republic) using a Pilatus 100K detector at a sample-detector distance of 0.5 m and at a wavelength of λ = 0.154 nm (l(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). One solute concentration of 2.50 mg/ml was measured at 4°C. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.",
"tags": [],
"intensity_unit": "arbitrary",
"experimental_mw": 148.0,
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"guinier_i0_mw": null,
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"porod_volume": 248.0,
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"estimated_volume": null,
"estimated_volume_error": null,
"guinier_point_first": 2,
"guinier_point_last": 14,
"pddf_point_first": null,
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"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDDN6_datloglog_img.png",
"symmetry": null,
"last_modified": "2019-12-06T13:07:15.624532+01:00",
"bragg_peak": []
}查看完整 manifest.json 原文
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