DNA Ligase IIIa bound to a nucleosome containing a nick at SHL-4 (composite)

entry_id	10yg
deposition_date	2026-02-12
title	DNA Ligase IIIa bound to a nucleosome containing a nick at SHL-4 (composite)
keywords	Nucleosome, DNA Ligase IIIa, DNA Repair, DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA complex; DNA BINDING PROTEIN/DNA
method	ELECTRON MICROSCOPY

rg_guinier	42.90 Å
rg_electron	41.40 Å
i0	1003690000.00
molecular_weight	199910.0 kDa
excluded_volume	224980 ų
envelope_volume	342760 ų
shell_volume	68976 ų
envelope_diameter	143.9 Å
shell_rg	46.75 Å
envelope_rg	40.98 Å
shape_rg	41.30 Å
total_rg	41.86 Å
total_atoms	13681
n_residues	1255
n_harmonics	20
q_range	— – 0.5000 Å−1
n_points	101
shell_type	directional
solvent_density	0.3340 e/ų
contrast_shell	0.0300 e/ų
crysol_version	4.1.3

dmax	139.8 Å
rg_real	42.77 Å
rg_real_error	1.16 Å
i0_real	1.0040e+09
i0_real_error	1.8030e+07
rg_reciprocal	42.90 Å
i0_reciprocal	1004000000.0000
total_estimate	0.8865
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	49.1 Å
skewness	0.213
kurtosis	-0.461
angular_range	— – 0.1850 Å−1
current_alpha	0.0000
highest_alpha	76350000.0000
n_real_points	38
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.894; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.990; Smooth: 0.849

No crystallography data available for this entry.

Files (7)

• pr_distribution /app/data/pr_computation/0y/10yg/pr_distribution.json
• pr_output /app/data/pr_computation/0y/10yg/10yg.pr.out
• pr_plot /app/data/visualization/pr_computation/0y/10yg/10yg_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/0y/10yg/10yg.dat
• saxs_fit /app/data/saxs_computation/0y/10yg/10yg.fit
• saxs_log /app/data/saxs_computation/0y/10yg/10yg.log
• saxs_plot /app/data/visualization/saxs_computation/0y/10yg/10yg_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/0y/10yg/10yg.fit
pddf	/app/data/pr_computation/0y/10yg/10yg.pr.out
profile	/app/data/saxs_computation/0y/10yg/10yg.dat