SAXSdb — 1al0

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1. Structure Basics

entry_id	1al0
deposition_date	1997-06-06
title	PROCAPSID OF BACTERIOPHAGE PHIX174
keywords	COMPLEX (VIRUS CAPSID PROTEINS), BACTERIOPHAGE, PROCAPSID, SCAFFOLDING PROTEIN, CHAPERONE, Icosahedral virus, Virus; VIRUS
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	35.51 Å
rg_electron	34.62 Å
i0	278074000.00
molecular_weight	134950.0 kDa
excluded_volume	169140 Å³
envelope_volume	231200 Å³
shell_volume	54132 Å³
envelope_diameter	116.7 Å
shell_rg	42.29 Å
envelope_rg	34.50 Å
shape_rg	34.60 Å
total_rg	35.26 Å
total_atoms	9521
n_residues	1204
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	107.8 Å
rg_real	35.29 Å
rg_real_error	0.63 Å
i0_real	2.7810e+08
i0_real_error	4.1240e+06
rg_reciprocal	35.43 Å
i0_reciprocal	278100000.0000
total_estimate	0.7196
solution_quality	REASONABLE a REASONABLE solution
n_peaks	2
r_peak_primary	47.9 Å
skewness	0.070
kurtosis	-0.579
angular_range	— – 0.2250 Å⁻¹
current_alpha	0.0000
highest_alpha	50950000.0000
n_real_points	46
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.954; Stabil: 1.000; Sysdev: 0.186; Positv: 1.000; Valcen: 0.982; Smooth: 0.946

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	SCAFFOLDING PROTEIN GPD
formula_weight	16953.3 kDa
src_method	nat
entity_count	4

Polymer

type	polypeptide(L)
strand_id	1,2,3,4
atom_count	9521

MSQVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQKLRAEGVM

Entity 2 polymer

description	CAPSID PROTEIN GPF
formula_weight	48423.4 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	F

SNIQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLAIDSTVDIFTFYVPHRHVYGEQWIKFMKDGVNATPLPTVNTTGYIDHAAFLGTINPDTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETELSRQMTTSTTSIDIMGLQAAYANLHTDQERDYFMQRYRDVISSFGGKTSYDADNRPLLVMRSNLWASGYDVDGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEIQYLNAKGALTYTDIAGDPVLYGNLPPREISMKDVFRSGDSSKKFKIAEGQWYRYAPSYVSPAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQLLQWNSQVKFNVTVYRNLPTTRDSIMTS

Entity 3 polymer

description	SPIKE PROTEIN GPG
formula_weight	19061.7 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	G

MFQTFISRHNSNFFSDKLVLTSVTPASSAPVLQTPKATSSTLYFDSLTVNAGNGGFLHCIQMDTSVNAANQVVSVGADIAFDADPKFFACLVRFESSSVPTTLPTAYDVYPLNGRHDGGYYTVKDCVTIDVLPRTPGNNVYVGFMVWSNFTATKCRGLVSLNQVIKEIICLQPLK

Entity 4 polymer

description	SCAFFOLDING PROTEIN GPB
formula_weight	13863.1 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	B

MEQLTKNQAVATSQEAVQNQNEPQLRDENAHNDKSVHGVLNPTYQAGLRRDAVQPDIEAERKKRDEIEAGKSYCSRRFGGATCDDKSAQIYARFDKNDWRIQPAEFYRFHDAEVNTFGYF

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6. Citations (6)

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length_a	774.000 Å
length_b	774.000 Å
length_c	774.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	96

space_group	I 21 3
int_tables_number	199
crystal_system	—

resolution	3.500 Å
resolution_low	8.000 Å
r_factor	0.3160
r_work	0.3160
r_free	—

fit	/app/data/saxs_computation/al/1al0/1al0.fit
pddf	/app/data/pr_computation/al/1al0/1al0.pr.out
profile	/app/data/saxs_computation/al/1al0/1al0.dat

PROCAPSID OF BACTERIOPHAGE PHIX174

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (4)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 polymer

Polymer

Entity 4 polymer

Polymer

6. Citations (6)

7. Files & Curves (10)

Files (7)

Curves (3)