← Back to search

1an9

D-AMINO ACID OXIDASE COMPLEX WITH O-AMINOBENZOATE

Method: X-RAY DIFFRACTION D_max: 111.5 Å Quality: GOOD

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	1an9
deposition_date	1997-06-28
title	D-AMINO ACID OXIDASE COMPLEX WITH O-AMINOBENZOATE
keywords	FAD, OXIDASE, D-AMINO ACID, OXIDOREDUCTASE, FLAVOPROTEIN; OXIDOREDUCTASE
method	X-RAY DIFFRACTION

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	30.40 Å
rg_electron	29.94 Å
i0	96807700.00
molecular_weight	78986.0 kDa
excluded_volume	99057 Å³
envelope_volume	114920 Å³
shell_volume	33783 Å³
envelope_diameter	117.9 Å
shell_rg	35.36 Å
envelope_rg	30.25 Å
shape_rg	29.91 Å
total_rg	30.49 Å
total_atoms	5584
n_residues	680
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	111.5 Å
rg_real	30.69 Å
rg_real_error	1.15 Å
i0_real	9.6810e+07
i0_real_error	1.6450e+06
rg_reciprocal	30.57 Å
i0_reciprocal	96800000.0000
total_estimate	0.7990
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	30.0 Å
skewness	0.628
kurtosis	0.019
angular_range	— – 0.2600 Å⁻¹
current_alpha	0.0000
highest_alpha	42340000.0000
n_real_points	53
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.601; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.653; Smooth: 0.927

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (4)

Entity 1 polymer

description	D-AMINO ACID OXIDASE
formula_weight	38612.9 kDa
ec_number	1.4.3.3
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,B
atom_count	5696

MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQPYTSEPSNPQEANWNQQTFNYLLSHIGSPNAANMGLTPVSGYNLFREAVPDPYWKDMVLGFRKLTPRELDMFPDYRYGWFNTSLILEGRKYLQWLTERLTERGVKFFLRKVESFEEVARGGADVIINCTGVWAGVLQPDPLLQPGRGQIIKVDAPWLKNFIITHDLERGIYNSPYIIPGLQAVTLGGTFQVGNWNEINNIQDHNTIWEGCCRLEPTLKDAKIVGEYTGFRPVRPQVRLEREQLRFGSSNTEVIHNYGHGGYGLTIHWGCALEVAKLFGKVLEERNLL

Source

organism	Sus scrofa
common_name	pig
ncbi_taxonomy_id	9823
host_organism	Escherichia coli

Entity 2 non-polymer

description	FLAVIN-ADENINE DINUCLEOTIDE
formula_weight	785.5 kDa
src_method	syn
entity_count	2

Entity 3 non-polymer

description	2-AMINOBENZOIC ACID
formula_weight	137.1 kDa
src_method	syn
entity_count	2

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	112

▶

6. Citations (2)

▶

length_a	109.310 Å
length_b	92.580 Å
length_c	71.320 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 21 21 21
int_tables_number	19
crystal_system	—

resolution	2.500 Å
resolution_low	10.000 Å
r_factor	0.2010
r_work	0.2010
r_free	0.2600

fit	/app/data/saxs_computation/an/1an9/1an9.fit
pddf	/app/data/pr_computation/an/1an9/1an9.pr.out
profile	/app/data/saxs_computation/an/1an9/1an9.dat

D-AMINO ACID OXIDASE COMPLEX WITH O-AMINOBENZOATE

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction