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1evi

THREE-DIMENSIONAL STRUCTURE OF THE PURPLE INTERMEDIATE OF PORCINE KIDNEY D-AMINO ACID OXIDASE

Method: X-RAY DIFFRACTION D_max: 110.4 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1evi
deposition_date	2000-04-20
title	THREE-DIMENSIONAL STRUCTURE OF THE PURPLE INTERMEDIATE OF PORCINE KIDNEY D-AMINO ACID OXIDASE
keywords	FLAVOENZYME, OXIDOREDUCTASE; OXIDOREDUCTASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	30.25 Å
rg_electron	29.77 Å
i0	96836300.00
molecular_weight	78938.0 kDa
excluded_volume	98989 Å³
envelope_volume	113790 Å³
shell_volume	33634 Å³
envelope_diameter	117.6 Å
shell_rg	35.17 Å
envelope_rg	30.04 Å
shape_rg	29.75 Å
total_rg	30.31 Å
total_atoms	5580
n_residues	680
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	110.4 Å
rg_real	30.52 Å
rg_real_error	1.08 Å
i0_real	9.6840e+07
i0_real_error	1.6440e+06
rg_reciprocal	30.41 Å
i0_reciprocal	96830000.0000
total_estimate	0.8026
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	29.7 Å
skewness	0.619
kurtosis	0.010
angular_range	— – 0.2600 Å⁻¹
current_alpha	0.0000
highest_alpha	42410000.0000
n_real_points	53
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.617; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.678; Smooth: 0.900

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	D-AMINO ACID OXIDASE
formula_weight	38612.9 kDa
ec_number	1.4.3.3
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,B
atom_count	5887

MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQPYTSEPSNPQEANWNQQTFNYLLSHIGSPNAANMGLTPVSGYNLFREAVPDPYWKDMVLGFRKLTPRELDMFPDYRYGWFNTSLILEGRKYLQWLTERLTERGVKFFLRKVESFEEVARGGADVIINCTGVWAGVLQPDPLLQPGRGQIIKVDAPWLKNFIITHDLERGIYNSPYIIPGLQAVTLGGTFQVGNWNEINNIQDHNTIWEGCCRLEPTLKDAKIVGEYTGFRPVRPQVRLEREQLRFGSSNTEVIHNYGHGGYGLTIHWGCALEVAKLFGKVLEERNLL

Source

organism	Sus scrofa
common_name	pig
ncbi_taxonomy_id	9823
host_organism	Escherichia coli

Entity 2 non-polymer

description	FLAVIN-ADENINE DINUCLEOTIDE
formula_weight	785.5 kDa
src_method	syn
entity_count	2

Entity 3 non-polymer

description	3,4-DIHYDRO-2H-PYRROLIUM-5-CARBOXYLATE
formula_weight	113.1 kDa
src_method	syn
entity_count	2

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	307

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6. Citations (1)

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length_a	107.730 Å
length_b	91.370 Å
length_c	71.240 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 21 21 21
int_tables_number	19
crystal_system	—

resolution	2.500 Å
resolution_low	10.000 Å
r_factor	0.2390
r_work	0.2320
r_free	0.2980

fit	/app/data/saxs_computation/ev/1evi/1evi.fit
pddf	/app/data/pr_computation/ev/1evi/1evi.pr.out
profile	/app/data/saxs_computation/ev/1evi/1evi.dat

THREE-DIMENSIONAL STRUCTURE OF THE PURPLE INTERMEDIATE OF PORCINE KIDNEY D-AMINO ACID OXIDASE

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction