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1ddo

REDUCED D-AMINO ACID OXIDASE FROM PIG KIDNEY IN COMPLEX WITH IMINO-TRP

Method: X-RAY DIFFRACTION D_max: 173.4 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1ddo
deposition_date	1997-01-16
title	REDUCED D-AMINO ACID OXIDASE FROM PIG KIDNEY IN COMPLEX WITH IMINO-TRP
keywords	FLAVOENZYME, FAD COFACTOR, OXIDOREDUCTASE; FLAVOENZYME
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	50.59 Å
rg_electron	50.36 Å
i0	1402100000.00
molecular_weight	315830.0 kDa
excluded_volume	395980 Å³
envelope_volume	513470 Å³
shell_volume	84864 Å³
envelope_diameter	184.2 Å
shell_rg	54.25 Å
envelope_rg	49.56 Å
shape_rg	50.35 Å
total_rg	50.52 Å
total_atoms	22334
n_residues	2712
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	173.4 Å
rg_real	50.69 Å
rg_real_error	1.69 Å
i0_real	1.4020e+09
i0_real_error	2.7400e+07
rg_reciprocal	50.49 Å
i0_reciprocal	1402000000.0000
total_estimate	0.8609
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	56.0 Å
skewness	0.425
kurtosis	-0.284
angular_range	— – 0.1550 Å⁻¹
current_alpha	0.0000
highest_alpha	65520000.0000
n_real_points	32
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.821; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.979; Smooth: 0.746

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4. Crystallography & Experiment

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5. Entities & Polymer Info (5)

Entity 1 polymer

description	D-AMINO ACID OXIDASE
formula_weight	39377.8 kDa
ec_number	1.4.3.3
src_method	nat
entity_count	8

Polymer

type	polypeptide(L)
strand_id	A,B,C,D,E,F,G,H
atom_count	22441

MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQPYTSEPSNPQEANWNQQTFNYLLSHIGSPNAANMGLTPVSGYNLFREAVPDPYWKDMVLGFRKLTPRELDMFPDYRYGWFNTSLILEGRKYLQWLTERLTERGVKFFLRKVESFEEVARGGADVIINCTGVWAGVLQPDPLLQPGRGQIIKVDAPWLKNFIITHDLERGIYNSPYIIPGLQAVTLGGTFQVGNWNEINNIQDHNTIWEGCCRLEPTLKDAKIVGEYTGFRPVRPQVRLEREQLRFGSSNTEVIHNYGHGGYGLTIHWGCALEVAKLFGKVLEERNLLTMPPSHL

Entity 2 non-polymer

description	FLAVIN-ADENINE DINUCLEOTIDE
formula_weight	785.5 kDa
src_method	syn
entity_count	8

Entity 3 non-polymer

description	IMINO-TRYPTOPHAN
formula_weight	202.2 kDa
src_method	syn
entity_count	8

Entity 4 non-polymer

description	D-TRYPTOPHAN
formula_weight	204.2 kDa
src_method	syn
entity_count	2

Entity 5 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	107

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6. Citations (1)

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length_a	325.200 Å
length_b	137.100 Å
length_c	196.800 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	64

space_group	C 2 2 21
int_tables_number	20
crystal_system	—

resolution	3.100 Å
resolution_low	20.000 Å
r_factor	0.2360
r_work	0.2360
r_free	0.2500

fit	/app/data/saxs_computation/dd/1ddo/1ddo.fit
pddf	/app/data/pr_computation/dd/1ddo/1ddo.pr.out
profile	/app/data/saxs_computation/dd/1ddo/1ddo.dat

REDUCED D-AMINO ACID OXIDASE FROM PIG KIDNEY IN COMPLEX WITH IMINO-TRP

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction