SAXSdb — 1ar9

▼

1. Structure Basics

entry_id	1ar9
deposition_date	1997-08-11
title	P1/MAHONEY POLIOVIRUS, SINGLE SITE MUTANT H2142Y
keywords	PICORNAVIRUS, POLIOVIRUS, COAT PROTEIN, Icosahedral virus, Virus; VIRUS
method	X-RAY DIFFRACTION

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	29.93 Å
rg_electron	28.91 Å
i0	142288000.00
molecular_weight	94770.0 kDa
excluded_volume	118610 Å³
envelope_volume	145870 Å³
shell_volume	40928 Å³
envelope_diameter	102.1 Å
shell_rg	37.01 Å
envelope_rg	29.61 Å
shape_rg	28.90 Å
total_rg	29.70 Å
total_atoms	6670
n_residues	851
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	96.6 Å
rg_real	29.85 Å
rg_real_error	0.56 Å
i0_real	1.4230e+08
i0_real_error	2.2090e+06
rg_reciprocal	29.89 Å
i0_reciprocal	142300000.0000
total_estimate	0.8923
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	36.4 Å
skewness	0.302
kurtosis	-0.310
angular_range	— – 0.2650 Å⁻¹
current_alpha	0.0000
highest_alpha	26140000.0000
n_real_points	54
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.884; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.999; Smooth: 0.946

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (8)

Entity 1 polymer

description	P1/MAHONEY POLIOVIRUS
formula_weight	437.4 kDa
mutation	CHAIN 2, H142Y
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	0
atom_count	7205

GSSST

Source

organism	Human poliovirus 1
ncbi_taxonomy_id	12081

Entity 2 polymer

description	P1/MAHONEY POLIOVIRUS
formula_weight	33488.6 kDa
mutation	CHAIN 2, H142Y
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	1

GLGQMLESMIDNTVRETVGAATSRDALPNTEASGPTHSKEIPALTAVETGATNPLVPSDTVQTRHVVQHRSRSESSIESFFARGACVTIMTVDNPASTTNKDKLFAVWKITYKDTVQLRRKLEFFTYSRFDMELTFVVTANFTETNNGHALNQVYQIMYVPPGAPVPEKWDDYTWQTSSNPSIFYTYGTAPARISVPYVGISNAYSHFYDGFSKVPLKDQSAALGDSLYGAASLNDFGILAVRVVNDHNPTKVTSKIRVYLKPKHIRVWCPRPPRAVAYYGPGVDYKDGTLTPLSTKDLTTY

Source

organism	Human poliovirus 1
ncbi_taxonomy_id	12081

Entity 3 polymer

description	P1/MAHONEY POLIOVIRUS
formula_weight	30100.8 kDa
mutation	CHAIN 2, H142Y
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	2

SPNIEACGYSDRVLQLTLGNSTITTQEAANSVVAYGRWPEYLRDSEANPVDQPTEPDVAACRFYTLDTVSWTKESRGWWWKLPDALRDMGLFGQNMYYHYLGRSGYTVHVQCNASKFHQGALGVFAVPEMCLAGDSNTTTMYTSYQNANPGEKGGTFTGTFTPDNNQTSPARRFCPVDYLLGNGTLLGNAFVFPHQIINLRTNNCATLVLPYVNSLSIDSMVKHNNWGIAILPLAPLNFASESSPEIPITLTIAPMCCEFNGLRNITLPRLQ

Source

organism	Human poliovirus 1
ncbi_taxonomy_id	12081

Entity 4 polymer

description	P1/MAHONEY POLIOVIRUS
formula_weight	26547.5 kDa
mutation	CHAIN 2, H142Y
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	3

GLPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEIDTMIPFDLSATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTFLFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQTIDDSFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQKALAQ

Source

organism	Human poliovirus 1
ncbi_taxonomy_id	12081

Entity 5 polymer

description	P1/MAHONEY POLIOVIRUS
formula_weight	7393.1 kDa
mutation	CHAIN 2, H142Y
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	4

GAQVSSQKVGAHENSNRAYGGSTINYTTINYYRDSASNAASKQDFSQDPSKFTEPIKDVLIKTAPMLN

Source

organism	Human poliovirus 1
ncbi_taxonomy_id	12081

Entity 6 non-polymer

description	SPHINGOSINE
formula_weight	299.5 kDa
src_method	syn
entity_count	1

Entity 7 non-polymer

description	MYRISTIC ACID
formula_weight	228.4 kDa
src_method	syn
entity_count	1

Entity 8 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	535

▶

6. Citations (3)

▶

length_a	319.950 Å
length_b	355.150 Å
length_c	377.050 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	120

space_group	P 21 21 2
int_tables_number	18
crystal_system	—

resolution	2.900 Å
resolution_low	11.000 Å
r_factor	—
r_work	0.2440
r_free	—

fit	/app/data/saxs_computation/ar/1ar9/1ar9.fit
pddf	/app/data/pr_computation/ar/1ar9/1ar9.pr.out
profile	/app/data/saxs_computation/ar/1ar9/1ar9.dat

P1/MAHONEY POLIOVIRUS, SINGLE SITE MUTANT H2142Y

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (8)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 polymer

Polymer

Source

Entity 4 polymer

Polymer

Source

Entity 5 polymer

Polymer

Source

Entity 6 non-polymer

Entity 7 non-polymer

Entity 8 water

6. Citations (3)

7. Files & Curves (10)

Files (7)

Curves (3)