SAXSdb — 1asj

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1. Structure Basics

entry_id	1asj
deposition_date	1997-08-11
title	P1/MAHONEY POLIOVIRUS, AT CRYOGENIC TEMPERATURE
keywords	PICORNAVIRUS, POLIOVIRUS, COAT PROTEIN, Icosahedral virus, Virus; VIRUS
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	29.94 Å
rg_electron	28.92 Å
i0	142764000.00
molecular_weight	94744.0 kDa
excluded_volume	118550 Å³
envelope_volume	146670 Å³
shell_volume	41098 Å³
envelope_diameter	102.4 Å
shell_rg	37.00 Å
envelope_rg	29.61 Å
shape_rg	28.91 Å
total_rg	29.71 Å
total_atoms	6668
n_residues	851
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	95.7 Å
rg_real	29.87 Å
rg_real_error	0.58 Å
i0_real	1.4280e+08
i0_real_error	2.0340e+06
rg_reciprocal	29.90 Å
i0_reciprocal	142800000.0000
total_estimate	0.8939
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	36.1 Å
skewness	0.301
kurtosis	-0.311
angular_range	— – 0.2650 Å⁻¹
current_alpha	0.0000
highest_alpha	25920000.0000
n_real_points	54
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.895; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.998; Smooth: 0.934

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4. Crystallography & Experiment

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5. Entities & Polymer Info (8)

Entity 1 polymer

description	P1/MAHONEY POLIOVIRUS
formula_weight	437.4 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	0
atom_count	7208

GSSST

Entity 2 polymer

description	P1/MAHONEY POLIOVIRUS
formula_weight	33488.6 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	1

GLGQMLESMIDNTVRETVGAATSRDALPNTEASGPTHSKEIPALTAVETGATNPLVPSDTVQTRHVVQHRSRSESSIESFFARGACVTIMTVDNPASTTNKDKLFAVWKITYKDTVQLRRKLEFFTYSRFDMELTFVVTANFTETNNGHALNQVYQIMYVPPGAPVPEKWDDYTWQTSSNPSIFYTYGTAPARISVPYVGISNAYSHFYDGFSKVPLKDQSAALGDSLYGAASLNDFGILAVRVVNDHNPTKVTSKIRVYLKPKHIRVWCPRPPRAVAYYGPGVDYKDGTLTPLSTKDLTTY

Entity 3 polymer

description	P1/MAHONEY POLIOVIRUS
formula_weight	30075.8 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	2

SPNIEACGYSDRVLQLTLGNSTITTQEAANSVVAYGRWPEYLRDSEANPVDQPTEPDVAACRFYTLDTVSWTKESRGWWWKLPDALRDMGLFGQNMYYHYLGRSGYTVHVQCNASKFHQGALGVFAVPEMCLAGDSNTTTMHTSYQNANPGEKGGTFTGTFTPDNNQTSPARRFCPVDYLLGNGTLLGNAFVFPHQIINLRTNNCATLVLPYVNSLSIDSMVKHNNWGIAILPLAPLNFASESSPEIPITLTIAPMCCEFNGLRNITLPRLQ

Entity 4 polymer

description	P1/MAHONEY POLIOVIRUS
formula_weight	26547.5 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	3

GLPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEIDTMIPFDLSATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTFLFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQTIDDSFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQKALAQ

Entity 5 polymer

description	P1/MAHONEY POLIOVIRUS
formula_weight	7393.1 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	4

GAQVSSQKVGAHENSNRAYGGSTINYTTINYYRDSASNAASKQDFSQDPSKFTEPIKDVLIKTAPMLN

Entity 6 non-polymer

description	SPHINGOSINE
formula_weight	299.5 kDa
src_method	syn
entity_count	1

Entity 7 non-polymer

description	MYRISTIC ACID
formula_weight	228.4 kDa
src_method	syn
entity_count	1

Entity 8 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	540

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6. Citations (3)

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length_a	320.150 Å
length_b	355.550 Å
length_c	377.800 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	120

space_group	P 21 21 2
int_tables_number	18
crystal_system	—

resolution	2.900 Å
resolution_low	11.000 Å
r_factor	—
r_work	0.2530
r_free	—

fit	/app/data/saxs_computation/as/1asj/1asj.fit
pddf	/app/data/pr_computation/as/1asj/1asj.pr.out
profile	/app/data/saxs_computation/as/1asj/1asj.dat

P1/MAHONEY POLIOVIRUS, AT CRYOGENIC TEMPERATURE

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (8)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 polymer

Polymer

Entity 4 polymer

Polymer

Entity 5 polymer

Polymer

Entity 6 non-polymer

Entity 7 non-polymer

Entity 8 water

6. Citations (3)

7. Files & Curves (10)

Files (7)

Curves (3)