1axi

STRUCTURAL PLASTICITY AT THE HGH:HGHBP INTERFACE

Method: X-RAY DIFFRACTION Dmax: 80.8 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

GROWTH HORMONE

Homo sapiens

UniProt P01241

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain A; UniProt 27–217 Mutation:G120R, K168R, D171T, K172Y, E174A, F176Y GROWTH HORMONE RECEPTOR × 2 (P10912) SO4 SULFATE ION × 2 X-RAY DIFFRACTION X-ray crystallization conditions:streak seeding;pH 6.5;CRYSTALLIZED BY STREAK SEEDING AT 5MG/ML COMPLEX IN 50MM BIS-TRIS (PH 6.5) 20% SATURATED AMMONIUM SULFATE, streak seeding Resolution 2.10 Å R-free 0.262

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

7 other PDB entries and 8 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name SOMA_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–191; UniProt 27–217

GROWTH HORMONE RECEPTOR

Homo sapiens

UniProt P10912

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain B; UniProt 19–254 Fragment:EXTRACELLULAR BINDING DOMAIN Mutation:W104A GROWTH HORMONE × 2 (P01241) SO4 SULFATE ION × 2 X-RAY DIFFRACTION X-ray crystallization conditions:streak seeding;pH 6.5;CRYSTALLIZED BY STREAK SEEDING AT 5MG/ML COMPLEX IN 50MM BIS-TRIS (PH 6.5) 20% SATURATED AMMONIUM SULFATE, streak seeding Resolution 2.10 Å R-free 0.262

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

8 other PDB entries and 11 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name GHR_HUMAN
Isoform
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–236; UniProt 19–254

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 1axi

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 1axi
Download Download

2. Structure Basics 2. Structure Basics

Entry ID entry_id1axi
Deposition date deposition_date1997-10-15
Structure title titleSTRUCTURAL PLASTICITY AT THE HGH:HGHBP INTERFACE
Keywords keywordsCOMPLEX (HORMONE-RECEPTOR), COMPLEX (HORMONE-RECEPTOR) complex; COMPLEX (HORMONE/RECEPTOR)
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier23.83
Radius of gyration Rg (electron density) rg_electron23.25
Forward intensity I(0) i028945700.00
Molecular weight molecular_weight41735.0 kDa
Excluded volume excluded_volume52369 ų
Envelope volume envelope_volume63622 ų
Hydration-shell volume shell_volume23507 ų
Envelope diameter envelope_diameter83.2
Shell Rg shell_rg29.31
Envelope Rg envelope_rg23.67
Shape Rg shape_rg23.22
Total Rg total_rg24.08
Total atoms total_atoms2939
Residues n_residues366
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax80.8
Rg (real space) rg_real23.84
Rg uncertainty (real space) rg_real_error0.53
I(0) (real space) i0_real2.8950e+07
I(0) uncertainty (real space) i0_real_error4.1970e+05
Rg (reciprocal space) rg_reciprocal23.83
I(0) (reciprocal space) i0_reciprocal28950000.0000
Solution quality estimate total_estimate0.7163
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary26.5
Skewness Skewness skewness0.356
Kurtosis Kurtosis kurtosis-0.359
Angular range angular_range— – 0.3350 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha10300000.0000
Real-space data points n_real_points65
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.840; Stabil: 1.000; Sysdev: 0.286; Positv: 1.000; Valcen: 0.947; Smooth: 0.986

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (4)

7. Fold Classification (SCOP + CATH) 6 domains

SCOP 2.08 (3 domains)

Domain ID domain_idd1axia_
Class classa — All alpha proteins
Fold Fold folda.26 — 4-helical cytokines
Superfamily Superfamily superfamilya.26.1 — 4-helical cytokines
Family Family familya.26.1.1 — Long-chain cytokines
Domain ID domain_idd1axib1
Class classb — All beta proteins
Fold Fold foldb.1 — Immunoglobulin-like beta-sandwich
Superfamily Superfamily superfamilyb.1.2 — Fibronectin type III
Family Family familyb.1.2.1 — Fibronectin type III
Domain ID domain_idd1axib2
Class classb — All beta proteins
Fold Fold foldb.1 — Immunoglobulin-like beta-sandwich
Superfamily Superfamily superfamilyb.1.2 — Fibronectin type III
Family Family familyb.1.2.1 — Fibronectin type III

CATH v4.4 (3 domains)

Domain ID domain_id1axiA00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1250 — Growth Hormone; Chain: A;
Homologous superfamily homologous superfamily10
Domain ID domain_id1axiB01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id1axiB02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins

8. Citations (2)

9. Files and Curves (10)