← Back to search

1bg1

TRANSCRIPTION FACTOR STAT3B/DNA COMPLEX

Method: X-RAY DIFFRACTION D_max: 134.7 Å Quality: GOOD

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	1bg1
deposition_date	1998-06-03
title	TRANSCRIPTION FACTOR STAT3B/DNA COMPLEX
keywords	TRANSCRIPTION FACTOR, PROTEIN-DNA COMPLEX, CYTOKINE ACTIVATION, COMPLEX (TRANSCRIPTION FACTOR-DNA), TRANSCRIPTION-DNA COMPLEX; TRANSCRIPTION/DNA
method	X-RAY DIFFRACTION

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	34.41 Å
rg_electron	34.68 Å
i0	81813300.00
molecular_weight	69629.0 kDa
excluded_volume	86230 Å³
envelope_volume	116830 Å³
shell_volume	31213 Å³
envelope_diameter	144.3 Å
shell_rg	36.56 Å
envelope_rg	35.79 Å
shape_rg	34.65 Å
total_rg	34.93 Å
total_atoms	4864
n_residues	576
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	134.7 Å
rg_real	34.91 Å
rg_real_error	1.70 Å
i0_real	8.1810e+07
i0_real_error	1.4340e+06
rg_reciprocal	34.59 Å
i0_reciprocal	81790000.0000
total_estimate	0.7527
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	32.2 Å
skewness	0.767
kurtosis	0.344
angular_range	— – 0.2300 Å⁻¹
current_alpha	0.0000
highest_alpha	13900000.0000
n_real_points	47
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.461; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.527; Smooth: 0.870

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (3)

Entity 1 polymer

description	;DNA (5'-D(TPGPCPAPTPTPTPCPCPCPGPTPAPAPAPTPCPT)-3') ;
formula_weight	5441.5 kDa
src_method	syn
entity_count	1

Polymer

type	polydeoxyribonucleotide
strand_id	B
atom_count	5018

TGCATTTCCCGTAAATCT

Entity 2 polymer

description	PROTEIN (TRANSCRIPTION FACTOR STAT3B)
formula_weight	68215.1 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A

GQANHPTAAVVTEKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQGDMQDLNGNNQSVTRQKMQQLEQMLTALDQMRRSIVSELAGLLSAMEYVQKTLTDEELADWKRRQQIACIGGPPNICLDRLENWITSLAESQLQTRQQIKKLEELQQKVSYKGDPIVQHRPMLEERIVELFRNLMKSAFVVERQPCMPMHPDRPLVIKTGVQFTTKVRLLVKFPELNYQLKIKVCIDKDSGDVAALRGSRKFNILGTNTKVMNMEESNNGSLSAEFKHLTLREQRCGNGGRANCDASLIVTEELHLITFETEVYHQGLKIDLETHSLPVVVISNICQMPNAWASILWYNMLTNNPKNVNFFTKPPIGTWDQVAEVLSWQFSSTTKRGLSIEQLTTLAEKLLGPGVNYSGCQITWAKFCKENMAGKGFSFWVWLDNIIDLVKKYILALWNEGYIMGFISKERERAILSTKPPGTFLLRFSESSKEGGVTFTWVEKDISGSTQIQSVEPYTKQQLNNMSFAEIIMGYKIMDATNILVSPLVYLYPDIPKEEAFGKYCRPESQEHPEADPGSAAPYLKTKFICVTPFIDAVWK

Source

organism	Mus musculus
common_name	house mouse
ncbi_taxonomy_id	10090
host_organism	Escherichia coli BL21

Entity 3 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	154

▶

6. Citations (1)

▶

length_a	174.000 Å
length_b	174.000 Å
length_c	79.400 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	I 41
int_tables_number	80
crystal_system	—

resolution	2.250 Å
resolution_low	20.000 Å
r_factor	—
r_work	0.2460
r_free	0.3010

fit	/app/data/saxs_computation/bg/1bg1/1bg1.fit
pddf	/app/data/pr_computation/bg/1bg1/1bg1.pr.out
profile	/app/data/saxs_computation/bg/1bg1/1bg1.dat

TRANSCRIPTION FACTOR STAT3B/DNA COMPLEX

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Source

Entity 3 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)