VASCULAR ENDOTHELIAL GROWTH FACTOR IN COMPLEX WITH A NEUTRALIZING ANTIBODY

entry_id	1bj1
deposition_date	1998-06-30
title	VASCULAR ENDOTHELIAL GROWTH FACTOR IN COMPLEX WITH A NEUTRALIZING ANTIBODY
keywords	COMPLEX (ANTIBODY-ANTIGEN), ANGIOGENIC FACTOR, IMMUNE SYSTEM; IMMUNE SYSTEM
method	X-RAY DIFFRACTION

rg_guinier	56.04 Å
rg_electron	57.59 Å
i0	199301000.00
molecular_weight	115850.0 kDa
excluded_volume	144150 ų
envelope_volume	214550 ų
shell_volume	34714 ų
envelope_diameter	196.1 Å
shell_rg	49.35 Å
envelope_rg	56.88 Å
shape_rg	57.59 Å
total_rg	57.30 Å
total_atoms	8146
n_residues	1050
n_harmonics	20
q_range	— – 0.5000 Å−1
n_points	101
shell_type	directional
solvent_density	0.3340 e/ų
contrast_shell	0.0300 e/ų
crysol_version	4.1.3

dmax	210.9 Å
rg_real	57.05 Å
rg_real_error	4.04 Å
i0_real	1.9930e+08
i0_real_error	4.3770e+06
rg_reciprocal	55.15 Å
i0_reciprocal	198700000.0000
total_estimate	0.3421
solution_quality	SUSPICIOUS a SUSPICIOUS solution
n_peaks	2
r_peak_primary	30.1 Å
skewness	0.510
kurtosis	-0.805
angular_range	— – 0.1400 Å−1
current_alpha	0.0000
highest_alpha	7289000.0000
n_real_points	29
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.093; Stabil: 1.000; Sysdev: 0.041; Positv: 1.000; Valcen: 0.040; Smooth: 0.000

Unit Cell

length_a	89.860 Å
length_b	66.980 Å
length_c	140.510 Å
angle_alpha	90.00 °
angle_beta	94.27 °
angle_gamma	90.00 °
z_pdb	4

Symmetry

space_group	P 1 21 1
int_tables_number	4
crystal_system	—

Refinement

resolution	2.400 Å
resolution_low	8.000 Å
r_factor	0.1960
r_work	0.1960
r_free	0.2660

Diffraction

temperature

100.0 K

Files (7)

• pr_distribution /app/data/pr_computation/bj/1bj1/pr_distribution.json
• pr_output /app/data/pr_computation/bj/1bj1/1bj1.pr.out
• pr_plot /app/data/visualization/pr_computation/bj/1bj1/1bj1_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/bj/1bj1/1bj1.dat
• saxs_fit /app/data/saxs_computation/bj/1bj1/1bj1.fit
• saxs_log /app/data/saxs_computation/bj/1bj1/1bj1.log
• saxs_plot /app/data/visualization/saxs_computation/bj/1bj1/1bj1_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/bj/1bj1/1bj1.fit
pddf	/app/data/pr_computation/bj/1bj1/1bj1.pr.out
profile	/app/data/saxs_computation/bj/1bj1/1bj1.dat