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1bjt

TOPOISOMERASE II RESIDUES 409-1201

Method: X-RAY DIFFRACTION D_max: 119.8 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1bjt
deposition_date	1998-06-29
title	TOPOISOMERASE II RESIDUES 409-1201
keywords	TOPOISOMERASE, QUATERNARY CHANGE, DNA-BINDING, DNA TOPOLOGY; TOPOISOMERASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	36.06 Å
rg_electron	36.08 Å
i0	90689100.00
molecular_weight	79262.0 kDa
excluded_volume	100680 Å³
envelope_volume	141400 Å³
shell_volume	35743 Å³
envelope_diameter	123.1 Å
shell_rg	38.47 Å
envelope_rg	35.86 Å
shape_rg	36.02 Å
total_rg	36.49 Å
total_atoms	5598
n_residues	679
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	119.8 Å
rg_real	36.21 Å
rg_real_error	1.17 Å
i0_real	9.0690e+07
i0_real_error	1.5080e+06
rg_reciprocal	36.12 Å
i0_reciprocal	90680000.0000
total_estimate	0.8710
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	29.9 Å
skewness	0.320
kurtosis	-0.681
angular_range	— – 0.2200 Å⁻¹
current_alpha	0.0000
highest_alpha	12420000.0000
n_real_points	45
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.879; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.804; Smooth: 0.878

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

Entity 1 polymer

description	TOPOISOMERASE II
formula_weight	91810.6 kDa
ec_number	5.99.1.3
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	5815

ENALKKSDGTRKSRITNYPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSFLGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHKFTWKQKYYKGLGTSLAQEVREYFSNLDRHLKIFHSLQGNDKDYIDLAFSKKKADDRKEWLRQYEPGTVLDPTLKEIPISDFINKELILFSLADNIRSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTAYHHGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQEDEKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELEQMHPWFRGWTGTIEEIEPLRYRMYGRIEQIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAEARGGNVPNKGSKTKGKGKRKLVDDED

Source

organism	Saccharomyces cerevisiae
common_name	;baker's yeast ;
ncbi_taxonomy_id	4932
host_organism	Saccharomyces cerevisiae

Entity 2 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	217

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6. Citations (3)

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length_a	103.400 Å
length_b	145.700 Å
length_c	161.300 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	C 2 2 21
int_tables_number	20
crystal_system	—

resolution	2.500 Å
resolution_low	14.000 Å
r_factor	0.2270
r_work	0.2270
r_free	0.2690

fit	/app/data/saxs_computation/bj/1bjt/1bjt.fit
pddf	/app/data/pr_computation/bj/1bjt/1bjt.pr.out
profile	/app/data/saxs_computation/bj/1bjt/1bjt.dat

TOPOISOMERASE II RESIDUES 409-1201

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 water

6. Citations (3)

7. Files & Curves (10)

Files (7)

Curves (3)