SAXSdb — 1bgw

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1. Structure Basics

entry_id	1bgw
deposition_date	1996-02-20
title	TOPOISOMERASE RESIDUES 410-1202,
keywords	ISOMERASE, TOPOISOMERASE, DNA-BINDING, PHOSPHORYLATED NUCLEAR PROTEIN, DNA-BINDING PROTEIN, DNA BINDING PROTEIN; DNA BINDING PROTEIN
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	35.29 Å
rg_electron	35.17 Å
i0	91293500.00
molecular_weight	78760.0 kDa
excluded_volume	99768 Å³
envelope_volume	142820 Å³
shell_volume	36018 Å³
envelope_diameter	121.4 Å
shell_rg	38.99 Å
envelope_rg	35.26 Å
shape_rg	35.12 Å
total_rg	35.66 Å
total_atoms	6819
n_residues	680
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	120.0 Å
rg_real	35.42 Å
rg_real_error	1.10 Å
i0_real	9.1290e+07
i0_real_error	1.6830e+06
rg_reciprocal	35.35 Å
i0_reciprocal	91290000.0000
total_estimate	0.8796
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	37.3 Å
skewness	0.373
kurtosis	-0.439
angular_range	— – 0.2250 Å⁻¹
current_alpha	0.0000
highest_alpha	9035000.0000
n_real_points	46
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.891; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.905; Smooth: 0.853

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

Entity 1 polymer

description	TOPOISOMERASE
formula_weight	91810.6 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	7125

ENALKKSDGTRKSRITNYPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSFLGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHKFTWKQKYYKGLGTSLAQEVREYFSNLDRHLKIFHSLQGNDKDYIDLAFSKKKADDRKEWLRQYEPGTVLDPTLKEIPISDFINKELILFSLADNIRSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTAYHHGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQEDEKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELEQMHPWFRGWTGTIEEIEPLRYRMYGRIEQIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAEARGGNVPNKGSKTKGKGKRKLVDDED

Source

organism	Saccharomyces cerevisiae
common_name	;baker's yeast ;
ncbi_taxonomy_id	4932
host_organism	Saccharomyces cerevisiae

Entity 2 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	100

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6. Citations (1)

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length_a	154.100 Å
length_b	154.100 Å
length_c	127.500 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 43 21 2
int_tables_number	96
crystal_system	—

resolution	2.700 Å
resolution_low	14.000 Å
r_factor	0.2200
r_work	0.2200
r_free	0.2770

fit	/app/data/saxs_computation/bg/1bgw/1bgw.fit
pddf	/app/data/pr_computation/bg/1bgw/1bgw.pr.out
profile	/app/data/saxs_computation/bg/1bgw/1bgw.dat

TOPOISOMERASE RESIDUES 410-1202,

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)