← Back to search

1bke

HUMAN SERUM ALBUMIN IN A COMPLEX WITH MYRISTIC ACID AND TRI-IODOBENZOIC ACID

Method: X-RAY DIFFRACTION D_max: 89.1 Å Quality: REASONABLE

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	1bke
deposition_date	1998-07-06
title	HUMAN SERUM ALBUMIN IN A COMPLEX WITH MYRISTIC ACID AND TRI-IODOBENZOIC ACID
keywords	PLASMA PROTEIN, METAL-BINDING, LIPID-BINDING; PLASMA PROTEIN
method	X-RAY DIFFRACTION

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	28.50 Å
rg_electron	27.70 Å
i0	72342300.00
molecular_weight	65441.0 kDa
excluded_volume	81171 Å³
envelope_volume	103430 Å³
shell_volume	31712 Å³
envelope_diameter	94.5 Å
shell_rg	34.47 Å
envelope_rg	27.64 Å
shape_rg	27.78 Å
total_rg	28.14 Å
total_atoms	4538
n_residues	581
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	89.1 Å
rg_real	28.43 Å
rg_real_error	0.69 Å
i0_real	7.2340e+07
i0_real_error	1.1500e+06
rg_reciprocal	28.46 Å
i0_reciprocal	72340000.0000
total_estimate	0.7303
solution_quality	REASONABLE a REASONABLE solution
n_peaks	1
r_peak_primary	87.5 Å
skewness	0.250
kurtosis	-0.498
angular_range	— – 0.2800 Å⁻¹
current_alpha	0.0000
highest_alpha	7840000.0000
n_real_points	57
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.955; Stabil: 1.000; Sysdev: 0.242; Positv: 1.000; Valcen: 0.999; Smooth: 0.900

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (3)

Entity 1 polymer

description	SERUM ALBUMIN
formula_weight	66133.8 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	4562

KSEVAHRFKDLGEENFKALVLIAFAQYLQQCPFEDHVKLVNEVTEFAKTCVADESAENCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEPERNECFLQHKDDNPNLPRLVRPEVDVMCTAFHDNEETFLKKYLYEIARRHPYFYAPELLFFAKRYKAAFTECCQAADKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKAWAVARLSQRFPKAEFAEVSKLVTDLTKVHTECCHGDLLECADDRADLAKYICENQDSISSKLKECCEKPLLEKSHCIAEVENDEMPADLPSLAADFVESKDVCKNYAEAKDVFLGMFLYEYARRHPDYSVVLLLRLAKTYETTLEKCCAAADPHECYAKVFDEFKPLVEEPQNLIKQNCELFEQLGEYKFQNALLVRYTKKVPQVSTPTLVEVSRNLGKVGSKCCKHPEAKRMPCAEDYLSVVLNQLCVLHEKTPVSDRVTKCCTESLVNRRPCFSALEVDETYVPKEFNAETFTFHADICTLSEKERQIKKQTALVELVKHKPKATKEQLKAVMDDFAAFVEKCCKADDKETCFAEEGKKLVAASQAALG

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Saccharomyces cerevisiae

Entity 2 non-polymer

description	MYRISTIC ACID
formula_weight	228.4 kDa
src_method	syn
entity_count	5

Entity 3 non-polymer

description	2,3,5-TRIIODOBENZOIC ACID
formula_weight	499.8 kDa
src_method	syn
entity_count	2

▶

6. Citations (1)

▶

length_a	187.650 Å
length_b	38.870 Å
length_c	95.910 Å
angle_alpha	90.00 °
angle_beta	105.49 °
angle_gamma	90.00 °
z_pdb	4

space_group	C 1 2 1
int_tables_number	5
crystal_system	—

resolution	3.150 Å
resolution_low	20.000 Å
r_factor	0.1774
r_work	0.1774
r_free	0.2480

fit	/app/data/saxs_computation/bk/1bke/1bke.fit
pddf	/app/data/pr_computation/bk/1bke/1bke.pr.out
profile	/app/data/saxs_computation/bk/1bke/1bke.dat

HUMAN SERUM ALBUMIN IN A COMPLEX WITH MYRISTIC ACID AND TRI-IODOBENZOIC ACID

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction