CLATHRIN HEAVY-CHAIN TERMINAL DOMAIN AND LINKER

Method: X-RAY DIFFRACTION D_max: 122.2 Å Quality: EXCELLENT

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1bpo
deposition_date	1998-08-11
title	CLATHRIN HEAVY-CHAIN TERMINAL DOMAIN AND LINKER
keywords	CLATHRIN ENDOCYTOSIS BETA-PROPELLER COATED-PITS, MEMBRANE PROTEIN; MEMBRANE PROTEIN
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	39.78 Å
rg_electron	39.02 Å
i0	391125000.00
molecular_weight	163330.0 kDa
excluded_volume	205630 Å³
envelope_volume	283310 Å³
shell_volume	59739 Å³
envelope_diameter	123.6 Å
shell_rg	45.83 Å
envelope_rg	37.86 Å
shape_rg	39.05 Å
total_rg	39.36 Å
total_atoms	11482
n_residues	1467
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	122.2 Å
rg_real	39.51 Å
rg_real_error	0.86 Å
i0_real	3.9110e+08
i0_real_error	6.0060e+06
rg_reciprocal	39.68 Å
i0_reciprocal	391200000.0000
total_estimate	0.9025
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	1
r_peak_primary	55.0 Å
skewness	0.065
kurtosis	-0.604
angular_range	— – 0.2000 Å⁻¹
current_alpha	0.0000
highest_alpha	49170000.0000
n_real_points	41
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.952; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.990; Smooth: 0.882

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

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6. Citations (1)

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length_a	205.825 Å
length_b	205.825 Å
length_c	87.630 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	18

space_group	P 32 2 1
int_tables_number	154
crystal_system	—

resolution	2.600 Å
resolution_low	6.000 Å
r_factor	0.2260
r_work	0.2260
r_free	0.2920

description	PROTEIN (CLATHRIN)
formula_weight	55090.2 kDa
src_method	man
entity_count	3

type	polypeptide(L)
strand_id	A,B,C
atom_count	11517

CLATHRIN HEAVY-CHAIN TERMINAL DOMAIN AND LINKER

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Rattus norvegicus
common_name	Norway rat
ncbi_taxonomy_id	10116
host_organism	Escherichia coli BL21(DE3)

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	35

fit	/app/data/saxs_computation/bp/1bpo/1bpo.fit
pddf	/app/data/pr_computation/bp/1bpo/1bpo.pr.out
profile	/app/data/saxs_computation/bp/1bpo/1bpo.dat