PEPTIDE-IN-GROOVE INTERACTIONS LINK TARGET PROTEINS TO THE B-PROPELLER OF CLATHRIN

Method: X-RAY DIFFRACTION D_max: 107.1 Å Quality: GOOD

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	1c9l
deposition_date	1999-08-02
title	PEPTIDE-IN-GROOVE INTERACTIONS LINK TARGET PROTEINS TO THE B-PROPELLER OF CLATHRIN
keywords	BETA-PROPELLER, HELICAL HAIRPIN, ENDOCYTOSIS-EXOCYTOSIS COMPLEX; ENDOCYTOSIS/EXOCYTOSIS
method	X-RAY DIFFRACTION

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	31.60 Å
rg_electron	31.06 Å
i0	103588000.00
molecular_weight	81370.0 kDa
excluded_volume	102210 Å³
envelope_volume	126340 Å³
shell_volume	35171 Å³
envelope_diameter	113.2 Å
shell_rg	36.64 Å
envelope_rg	31.01 Å
shape_rg	31.04 Å
total_rg	31.62 Å
total_atoms	5716
n_residues	730
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	107.1 Å
rg_real	31.76 Å
rg_real_error	0.94 Å
i0_real	1.0360e+08
i0_real_error	1.6170e+06
rg_reciprocal	31.70 Å
i0_reciprocal	103600000.0000
total_estimate	0.8636
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	32.1 Å
skewness	0.462
kurtosis	-0.397
angular_range	— – 0.2500 Å⁻¹
current_alpha	0.0000
highest_alpha	19390000.0000
n_real_points	51
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.778; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.948; Smooth: 0.940

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (2)

▶

6. Citations (1)

▶

length_a	137.620 Å
length_b	130.787 Å
length_c	78.468 Å
angle_alpha	90.00 °
angle_beta	115.47 °
angle_gamma	90.00 °
z_pdb	8

space_group	C 1 2 1
int_tables_number	5
crystal_system	—

resolution	2.900 Å
resolution_low	30.000 Å
r_factor	0.2210
r_work	0.2210
r_free	0.2630

description	CLATHRIN
formula_weight	39751.6 kDa
src_method	man
entity_count	2

type	polypeptide(L)
strand_id	A,B
atom_count	5716

PEPTIDE-IN-GROOVE INTERACTIONS LINK TARGET PROTEINS TO THE B-PROPELLER OF CLATHRIN

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Rattus norvegicus
common_name	Norway rat
ncbi_taxonomy_id	10116
host_organism	Escherichia coli

description	B-ADAPTIN 3
formula_weight	980.0 kDa
src_method	syn
entity_count	2

fit	/app/data/saxs_computation/c9/1c9l/1c9l.fit
pddf	/app/data/pr_computation/c9/1c9l/1c9l.pr.out
profile	/app/data/saxs_computation/c9/1c9l/1c9l.dat