PEPTIDE-IN-GROOVE INTERACTIONS LINK TARGET PROTEINS TO THE B-PROPELLER OF CLATHRIN

Method: X-RAY DIFFRACTION D_max: 105.7 Å Quality: REASONABLE

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1c9i
deposition_date	1999-08-02
title	PEPTIDE-IN-GROOVE INTERACTIONS LINK TARGET PROTEINS TO THE B-PROPELLER OF CLATHRIN
keywords	BETA-PROPELLER, HELICAL HAIRPIN, ENDOCYTOSIS-EXOCYTOSIS COMPLEX; ENDOCYTOSIS/EXOCYTOSIS
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	31.55 Å
rg_electron	31.07 Å
i0	101136000.00
molecular_weight	80737.0 kDa
excluded_volume	101560 Å³
envelope_volume	124880 Å³
shell_volume	34772 Å³
envelope_diameter	112.4 Å
shell_rg	36.59 Å
envelope_rg	31.10 Å
shape_rg	31.05 Å
total_rg	31.64 Å
total_atoms	5671
n_residues	726
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	105.7 Å
rg_real	31.73 Å
rg_real_error	0.95 Å
i0_real	1.0110e+08
i0_real_error	1.6740e+06
rg_reciprocal	31.66 Å
i0_reciprocal	101100000.0000
total_estimate	0.6478
solution_quality	REASONABLE a REASONABLE solution
n_peaks	2
r_peak_primary	31.7 Å
skewness	0.471
kurtosis	-0.393
angular_range	— – 0.2500 Å⁻¹
current_alpha	0.0000
highest_alpha	18390000.0000
n_real_points	51
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.791; Stabil: 1.000; Sysdev: 0.062; Positv: 1.000; Valcen: 0.951; Smooth: 0.906

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

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6. Citations (1)

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length_a	137.040 Å
length_b	131.275 Å
length_c	79.010 Å
angle_alpha	90.00 °
angle_beta	116.31 °
angle_gamma	90.00 °
z_pdb	8

space_group	C 1 2 1
int_tables_number	5
crystal_system	—

resolution	2.900 Å
resolution_low	30.000 Å
r_factor	0.2270
r_work	0.2270
r_free	0.2690

description	CLATHRIN
formula_weight	39953.9 kDa
src_method	man
entity_count	2

type	polypeptide(L)
strand_id	A,B
atom_count	5671

PEPTIDE-IN-GROOVE INTERACTIONS LINK TARGET PROTEINS TO THE B-PROPELLER OF CLATHRIN

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Rattus norvegicus
common_name	Norway rat
ncbi_taxonomy_id	10116
host_organism	Escherichia coli

description	B-ADAPTIN 3
formula_weight	916.0 kDa
mutation	D815A, D823A
src_method	syn
entity_count	2

fit	/app/data/saxs_computation/c9/1c9i/1c9i.fit
pddf	/app/data/pr_computation/c9/1c9i/1c9i.pr.out
profile	/app/data/saxs_computation/c9/1c9i/1c9i.dat