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1bql

STRUCTURE OF AN ANTI-HEL FAB FRAGMENT COMPLEXED WITH BOBWHITE QUAIL LYSOZYME

Method: X-RAY DIFFRACTION D_max: 107.4 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1bql
deposition_date	1995-02-03
title	STRUCTURE OF AN ANTI-HEL FAB FRAGMENT COMPLEXED WITH BOBWHITE QUAIL LYSOZYME
keywords	ANTIBODY-ANTIGEN complex, HYHEL-5, ANTI-LYSOZYME, BOBWHITE QUAIL; ANTIBODY/ANTIGEN
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	30.60 Å
rg_electron	30.41 Å
i0	63316600.00
molecular_weight	60402.0 kDa
excluded_volume	74537 Å³
envelope_volume	95915 Å³
shell_volume	28796 Å³
envelope_diameter	109.9 Å
shell_rg	34.64 Å
envelope_rg	30.21 Å
shape_rg	30.35 Å
total_rg	30.94 Å
total_atoms	4240
n_residues	555
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	107.4 Å
rg_real	30.93 Å
rg_real_error	1.31 Å
i0_real	6.3320e+07
i0_real_error	1.0030e+06
rg_reciprocal	30.79 Å
i0_reciprocal	63310000.0000
total_estimate	0.8241
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	28.9 Å
skewness	0.592
kurtosis	-0.195
angular_range	— – 0.2600 Å⁻¹
current_alpha	0.0000
highest_alpha	11030000.0000
n_real_points	53
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.716; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.669; Smooth: 0.895

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	HYHEL-5 FAB (LIGHT CHAIN)
formula_weight	23326.7 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	L
atom_count	4326

DIVLTQSPAIMSASPGEKVTMTCSASSSVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAATYYCQQWGRNPTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC

Source

organism	Mus musculus
common_name	house mouse
ncbi_taxonomy_id	10090

Entity 2 polymer

description	HYHEL-5 FAB (HEAVY CHAIN)
formula_weight	22948.5 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	H

QVQLQQSGAELMKPGASVKISCKASGYTFSDYWIEWVKQRPGHGLEWIGEILPGSGSTNYHERFKGKATFTADTSSSTAYMQLNSLTSEDSGVYYCLHGNYDFDGWGQGTTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVP

Source

organism	Mus musculus
common_name	house mouse
ncbi_taxonomy_id	10090

Entity 3 polymer

description	BOBWHITE QUAIL LYSOZYME
formula_weight	14289.1 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	Y

KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNSQATNRNTDGSTDYGVLQINSRWWCNDGKTPGSRNLCNIPCSALLSSDITATVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL

Source

organism	Colinus virginianus
common_name	northern bobwhite
ncbi_taxonomy_id	9014

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	86

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6. Citations (3)

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length_a	54.800 Å
length_b	74.800 Å
length_c	79.000 Å
angle_alpha	90.00 °
angle_beta	101.80 °
angle_gamma	90.00 °
z_pdb	2

space_group	P 1 21 1
int_tables_number	4
crystal_system	—

resolution	2.600 Å
resolution_low	8.000 Å
r_factor	0.1910
r_work	0.1910
r_free	0.2910

fit	/app/data/saxs_computation/bq/1bql/1bql.fit
pddf	/app/data/pr_computation/bq/1bql/1bql.pr.out
profile	/app/data/saxs_computation/bq/1bql/1bql.dat

STRUCTURE OF AN ANTI-HEL FAB FRAGMENT COMPLEXED WITH BOBWHITE QUAIL LYSOZYME

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

5. Entities & Polymer Info (4)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 polymer

Polymer

Source

Entity 4 water

6. Citations (3)

7. Files & Curves (10)

Files (7)

Curves (3)