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1bxx

MU2 ADAPTIN SUBUNIT (AP50) OF AP2 ADAPTOR (SECOND DOMAIN), COMPLEXED WITH TGN38 INTERNALIZATION PEPTIDE DYQRLN

Method: X-RAY DIFFRACTION D_max: 87.4 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1bxx
deposition_date	1998-10-08
title	MU2 ADAPTIN SUBUNIT (AP50) OF AP2 ADAPTOR (SECOND DOMAIN), COMPLEXED WITH TGN38 INTERNALIZATION PEPTIDE DYQRLN
keywords	ENDOCYTOSIS, ADAPTOR, PEPTIDE COMPLEX, ENDOCYTOSIS-EXOCYTOSIS COMPLEX; ENDOCYTOSIS/EXOCYTOSIS
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	24.02 Å
rg_electron	23.60 Å
i0	14424000.00
molecular_weight	29809.0 kDa
excluded_volume	37877 Å³
envelope_volume	46665 Å³
shell_volume	18014 Å³
envelope_diameter	89.4 Å
shell_rg	28.54 Å
envelope_rg	24.18 Å
shape_rg	23.59 Å
total_rg	24.32 Å
total_atoms	2093
n_residues	262
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	87.4 Å
rg_real	24.35 Å
rg_real_error	0.84 Å
i0_real	1.4420e+07
i0_real_error	2.2200e+05
rg_reciprocal	24.27 Å
i0_reciprocal	14420000.0000
total_estimate	0.7630
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	20.5 Å
skewness	0.613
kurtosis	-0.220
angular_range	— – 0.3300 Å⁻¹
current_alpha	0.0000
highest_alpha	4928000.0000
n_real_points	65
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.530; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.401; Smooth: 0.923

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	PROTEIN (AP50)
formula_weight	32758.4 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	2142

MHHHHHHQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC

Source

organism	Rattus norvegicus
common_name	Norway rat
ncbi_taxonomy_id	10116
host_organism	Escherichia coli BL21

Entity 2 polymer

description	PROTEIN (TGN38 PEPTIDE)
formula_weight	808.9 kDa
src_method	syn
entity_count	1

Polymer

type	polypeptide(L)
strand_id	P

DYQRLN

Entity 3 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	49

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6. Citations (1)

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length_a	125.260 Å
length_b	125.260 Å
length_c	73.790 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	6

space_group	P 64
int_tables_number	172
crystal_system	—

resolution	2.700 Å
resolution_low	22.000 Å
r_factor	0.2820
r_work	0.2630
r_free	0.3250

fit	/app/data/saxs_computation/bx/1bxx/1bxx.fit
pddf	/app/data/pr_computation/bx/1bxx/1bxx.pr.out
profile	/app/data/saxs_computation/bx/1bxx/1bxx.dat

MU2 ADAPTIN SUBUNIT (AP50) OF AP2 ADAPTOR (SECOND DOMAIN), COMPLEXED WITH TGN38 INTERNALIZATION PEPTIDE DYQRLN

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Entity 3 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)