STRUCTURE AND MECHANISM OF THE HOMODIMERIC ASSEMBLY OF THE RXR ON DNA

entry_id	1by4
deposition_date	1998-10-22
title	STRUCTURE AND MECHANISM OF THE HOMODIMERIC ASSEMBLY OF THE RXR ON DNA
keywords	RXR, NUCLEAR RECEPTOR, HORMONE RESPONSE ELEMENT, PROTEIN-DNA INTERATIONS, GENE REGULATION-DNA COMPLEX; GENE REGULATION/DNA
method	X-RAY DIFFRACTION

rg_guinier	31.79 Å
rg_electron	32.41 Å
i0	84084600.00
molecular_weight	56562.0 kDa
excluded_volume	63767 ų
envelope_volume	91915 ų
shell_volume	25849 ų
envelope_diameter	113.4 Å
shell_rg	35.87 Å
envelope_rg	32.32 Å
shape_rg	32.39 Å
total_rg	32.69 Å
total_atoms	3832
n_residues	380
n_harmonics	20
q_range	— – 0.5000 Å−1
n_points	101
shell_type	directional
solvent_density	0.3340 e/ų
contrast_shell	0.0300 e/ų
crysol_version	4.1.3

dmax	112.0 Å
rg_real	32.27 Å
rg_real_error	1.30 Å
i0_real	8.4080e+07
i0_real_error	1.4430e+06
rg_reciprocal	32.07 Å
i0_reciprocal	84070000.0000
total_estimate	0.5784
solution_quality	REASONABLE a REASONABLE solution
n_peaks	1
r_peak_primary	24.6 Å
skewness	0.535
kurtosis	-0.526
angular_range	— – 0.2500 Å−1
current_alpha	0.0000
highest_alpha	8068000.0000
n_real_points	51
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.562; Stabil: 1.000; Sysdev: 0.169; Positv: 1.000; Valcen: 0.418; Smooth: 0.904

Unit Cell

length_a	70.930 Å
length_b	33.650 Å
length_c	101.400 Å
angle_alpha	90.00 °
angle_beta	89.95 °
angle_gamma	90.00 °
z_pdb	8

Symmetry

space_group	P 1 21 1
int_tables_number	4
crystal_system	—

Refinement

resolution	2.100 Å
resolution_low	10.000 Å
r_factor	0.2340
r_work	0.2340
r_free	0.2840

Diffraction

temperature

113.0 K

Files (7)

• pr_distribution /app/data/pr_computation/by/1by4/pr_distribution.json
• pr_output /app/data/pr_computation/by/1by4/1by4.pr.out
• pr_plot /app/data/visualization/pr_computation/by/1by4/1by4_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/by/1by4/1by4.dat
• saxs_fit /app/data/saxs_computation/by/1by4/1by4.fit
• saxs_log /app/data/saxs_computation/by/1by4/1by4.log
• saxs_plot /app/data/visualization/saxs_computation/by/1by4/1by4_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/by/1by4/1by4.fit
pddf	/app/data/pr_computation/by/1by4/1by4.pr.out
profile	/app/data/saxs_computation/by/1by4/1by4.dat