1cb2

CELLOBIOHYDROLASE II, CATALYTIC DOMAIN, MUTANT Y169F

Method: X-RAY DIFFRACTION Dmax: 125.8 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

CELLOBIOHYDROLASE II

Hypocrea jecorina

UniProt P07987

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 107–471 Fragment:CATALYTIC Mutation:Y169F NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 2 MAN alpha-D-mannopyranose × 7 X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions Resolution 2.00 Å R-free 0.232
2 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain B; UniProt 107–471 Fragment:CATALYTIC Mutation:Y169F NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 2 MAN alpha-D-mannopyranose × 7 X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions Resolution 2.00 Å R-free 0.232

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

11 other PDB entries and 21 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name GUX2_TRIRE
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–365; UniProt 107–471 Author chain B; PDBConstruct 1–365; UniProt 107–471

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 1cb2

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 1cb2
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2. Structure Basics 2. Structure Basics

Entry ID entry_id1cb2
Deposition date deposition_date1995-11-25
Structure title titleCELLOBIOHYDROLASE II, CATALYTIC DOMAIN, MUTANT Y169F
Keywords keywordsHYDROLASE (O-GLYCOSYL), GLYCOSIDASE, GLYCOPROTEIN; HYDROLASE (O-GLYCOSYL)
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier39.06
Radius of gyration Rg (electron density) rg_electron38.92
Forward intensity I(0) i099698600.00
Molecular weight molecular_weight80828.0 kDa
Excluded volume excluded_volume100620 ų
Envelope volume envelope_volume133080 ų
Hydration-shell volume shell_volume27782 ų
Envelope diameter envelope_diameter125.1
Shell Rg shell_rg46.43
Envelope Rg envelope_rg37.67
Shape Rg shape_rg38.90
Total Rg total_rg39.41
Total atoms total_atoms5702
Residues n_residues726
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax125.8
Rg (real space) rg_real39.41
Rg uncertainty (real space) rg_real_error1.50
I(0) (real space) i0_real9.9700e+07
I(0) uncertainty (real space) i0_real_error2.1620e+06
Rg (reciprocal space) rg_reciprocal39.21
I(0) (reciprocal space) i0_reciprocal99680000.0000
Solution quality estimate total_estimate0.6601
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks3
Primary peak position r_peak_primary28.3
Skewness Skewness skewness0.228
Kurtosis Kurtosis kurtosis-1.189
Angular range angular_range— – 0.2000 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha58570000.0000
Real-space data points n_real_points41
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.087; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.393; Smooth: 0.922

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (4)

7. Fold Classification (SCOP + CATH) 4 domains

SCOP 2.08 (2 domains)

Domain ID domain_idd1cb2a_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.6 — 7-stranded beta/alpha barrel
Superfamily Superfamily superfamilyc.6.1 — Glycosyl hydrolases family 6, cellulases
Family Family familyc.6.1.1 — Glycosyl hydrolases family 6, cellulases
Domain ID domain_idd1cb2b_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.6 — 7-stranded beta/alpha barrel
Superfamily Superfamily superfamilyc.6.1 — Glycosyl hydrolases family 6, cellulases
Family Family familyc.6.1.1 — Glycosyl hydrolases family 6, cellulases

CATH v4.4 (2 domains)

Domain ID domain_id1cb2A00
Class class3 — Alpha Beta
Architecture architecture20 — Alpha-Beta Barrel
Topology topology20 — TIM Barrel
Homologous superfamily homologous superfamily40 — 1, 4-beta cellobiohydrolase
Domain ID domain_id1cb2B00
Class class3 — Alpha Beta
Architecture architecture20 — Alpha-Beta Barrel
Topology topology20 — TIM Barrel
Homologous superfamily homologous superfamily40 — 1, 4-beta cellobiohydrolase

8. Citations (2)

9. Files and Curves (10)