4i5u

Crystal structure of a fungal chimeric cellobiohydrolase Cel6A

Method: X-RAY DIFFRACTION Dmax: 60.8 Å Quality: EXCELLENT

1. Protein Identity and Related Structures Protein Identity & Related Structures

Chimeric cel6A

Trichoderma reesei

UniProt P07987

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Insufficient information Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 158–331 Chain A; UniProt 425–471 Not recorded ACT ACETATE ION × 2 EDO 1,2-ETHANEDIOL × 10 PG4 TETRAETHYLENE GLYCOL × 1 PGE TRIETHYLENE GLYCOL × 2 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;pH 6;pH 6.0, VAPOR DIFFUSION, SITTING DROP Resolution 1.22 Å R-free 0.158

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

11 other PDB entries and 22 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name GUX2_HYPJE
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 46–219; UniProt 158–331 Author chain A; PDBConstruct 312–358; UniProt 425–471

Chimeric cel6A

Trichoderma reesei

UniProt Q5G2D4

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Insufficient information Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 339–430 Not recorded ACT ACETATE ION × 2 EDO 1,2-ETHANEDIOL × 10 PG4 TETRAETHYLENE GLYCOL × 1 PGE TRIETHYLENE GLYCOL × 2 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;pH 6;pH 6.0, VAPOR DIFFUSION, SITTING DROP Resolution 1.22 Å R-free 0.158

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name Q5G2D4_9PEZI
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 220–311; UniProt 339–430

Chimeric cel6A

Trichoderma reesei

UniProt Q9C1S9

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Insufficient information Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 117–161 Not recorded ACT ACETATE ION × 2 EDO 1,2-ETHANEDIOL × 10 PG4 TETRAETHYLENE GLYCOL × 1 PGE TRIETHYLENE GLYCOL × 2 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;pH 6;pH 6.0, VAPOR DIFFUSION, SITTING DROP Resolution 1.22 Å R-free 0.158

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

3 other PDB entries and 4 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name GUX6_HUMIN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–45; UniProt 117–161

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 4i5u

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 4i5u
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2. Structure Basics 2. Structure Basics

Entry ID entry_id4i5u
Deposition date deposition_date2012-11-29
Structure title titleCrystal structure of a fungal chimeric cellobiohydrolase Cel6A
Keywords keywordscellobiohydrolase, chimera protein, glycoside hydrolase, HYDROLASE; HYDROLASE
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier20.27
Radius of gyration Rg (electron density) rg_electron19.12
Forward intensity I(0) i026834600.00
Molecular weight molecular_weight39909.0 kDa
Excluded volume excluded_volume49906 ų
Envelope volume envelope_volume55108 ų
Hydration-shell volume shell_volume23238 ų
Envelope diameter envelope_diameter60.8
Shell Rg shell_rg26.39
Envelope Rg envelope_rg19.29
Shape Rg shape_rg19.08
Total Rg total_rg20.13
Total atoms total_atoms2820
Residues n_residues358
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax60.8
Rg (real space) rg_real20.10
Rg uncertainty (real space) rg_real_error0.30
I(0) (real space) i0_real2.6830e+07
I(0) uncertainty (real space) i0_real_error3.4060e+05
Rg (reciprocal space) rg_reciprocal20.13
I(0) (reciprocal space) i0_reciprocal26840000.0000
Solution quality estimate total_estimate0.9012
Solution quality rating solution_quality EXCELLENT a EXCELLENT solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary26.9
Skewness Skewness skewness0.032
Kurtosis Kurtosis kurtosis-0.500
Angular range angular_range— – 0.3900 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha6818000.0000
Real-space data points n_real_points71
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.918; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.969; Smooth: 0.988

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (6)

7. Fold Classification (SCOP + CATH) 2 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd4i5ua_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.6 — 7-stranded beta/alpha barrel
Superfamily Superfamily superfamilyc.6.1 — Glycosyl hydrolases family 6, cellulases
Family Family familyc.6.1.1 — Glycosyl hydrolases family 6, cellulases

CATH v4.4 (1 domains)

Domain ID domain_id4i5uA00
Class class3 — Alpha Beta
Architecture architecture20 — Alpha-Beta Barrel
Topology topology20 — TIM Barrel
Homologous superfamily homologous superfamily40 — 1, 4-beta cellobiohydrolase

8. Citations (1)

9. Files and Curves (10)