CYTOCHROME C
Achromobacter xylosoxidans
State in the Current Structure
| Assembly | Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Associated Components | Method and Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|
| 1 | Protein monomer Monomer Protein × 1 PDB declaration: monomeric（1） Consistent with protein copy count | Chain A； UniProt 2–127 | Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions | Resolution 2.15 Å |
Other States of the Same Protein in the Database
Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.
| Other PDB | Difference from Current Entry 1CGN | Assembly / Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Non-polymers | Method and Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|---|
| 1CGO CYTOCHROME C' Deposited 1995-05-01 | Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
2–127（126 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.80 Å |
| 1E83 Cytochrome c' from Alcaligenes xylosoxidans - oxidized structure Deposited 2000-09-15 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–127（127 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；HANGING DROP VAPOUR DIFFUSION. PROTEIN AT CONCENTRATION 8 MG/ML WAS MIXED WITH AN EQUAL VOLUME OF WELL SOLUTION CONSISTING OF 55-65% SATURATED AMMONIUM SULFATE IN 100 MM HEPES BUFFER AT PH 7.5
|
Resolution 2.05 Å R-free 0.252 |
| 1E84 Cytochrome c' from Alcaligenes xylosoxidans - reduced structure Deposited 2000-09-15 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–127（127 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；HANGING DROP VAPOUR DIFFUSION. PROTEIN AT CONCENTRATION 8 MG/ML WAS MIXED WITH AN EQUAL VOLUME OF WELL SOLUTION CONSISTING OF 55-65% SATURATED AMMONIUM SULFATE IN 100 MM HEPES BUFFER AT PH 7.5. REDUCED USING MOTHER LIQUOR CONTAINING 20 MM SODIUM DITHIONITE.
|
Resolution 1.90 Å R-free 0.273 |
| 1E85 Cytochrome c' from Alcaligenes xylosoxidans - reduced structure with NO bound to proximal side of heme Deposited 2000-09-15 | Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
2–127（126 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 NO NITRIC OXIDE × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；HANGING DROP VAPOUR DIFFUSION. PROTEIN AT CONCENTRATION 8 MG/ML WAS MIXED WITH AN EQUAL VOLUME OF WELL SOLUTION CONSISTING OF 55-65% SATURATED AMMONIUM SULFATE IN 100 MM HEPES BUFFER AT PH 7.5. REDUCED USING MOTHER LIQUOR CONTAINING 20 MM SODIUM DITHIONITE, THEN INCUBATED FOR 6 DAYS IN MOTHER LIQUOR SATURATED WITH NO.
|
Resolution 1.35 Å R-free 0.220 |
| 1E86 Cytochrome c' from Alcaligenes xylosoxidans - reduced structure with CO bound to distal side of heme Deposited 2000-09-15 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–127（127 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 CMO CARBON MONOXIDE × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；HANGING DROP VAPOUR DIFFUSION. PROTEIN AT CONCENTRATION 8 MG/ML WAS MIXED WITH AN EQUAL VOLUME OF WELL SOLUTION CONSISTING OF 55-65% SATURATED AMMONIUM SULFATE IN 100 MM HEPES BUFFER AT PH 7.5. REDUCED USING MOTHER LIQUOR CONTAINING 20 MM SODIUM DITHIONITE, THEN INCUBATED FOR 6 DAYS IN MOTHER LIQUOR SATURATED WITH CO.
|
Resolution 1.95 Å R-free 0.258 |
| 2XL6 Cytochrome c prime from Alcaligenes xylosoxidans: Ferrous R124A variant with bound NO Deposited 2010-07-19 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–127（127 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 SO4 SULFATE ION × 4 NO NITRIC OXIDE × 2 NO3 NITRATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
AMMONIUM SULPHATE, TRIS PH7.5
|
Resolution 1.07 Å R-free 0.161 |
| 2XL8 REDUCED STRUCTURE OF R124F MUTANT OF CYTOCHROME C' FROM ALCALIGENES XYLOSOXIDANS Deposited 2010-07-20 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–127（127 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；294 K；SULPHATE AMMONIUM, TRIS PH 7.5
|
Resolution 1.14 Å R-free 0.161 |
| 2XLD Cytochrome c prime from Alcaligenes xylosoxidans: Ferrous R124Q variant Deposited 2010-07-20 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–127（127 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 SO4 SULFATE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.4；AMMONIUM SULPHATE, HEPES PH 7.5
|
Resolution 1.40 Å R-free 0.220 |
| 2XLE Cytochrome c prime from Alcaligenes xylosoxidans: Ferrous R124K variant with bound NO Deposited 2010-07-20 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–127（127 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 NO NITRIC OXIDE × 2 SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5；AMMONIUM SULPHATE, HEPES PH7.5
|
Resolution 1.12 Å R-free 0.181 |
| 2XLH REDUCED STRUCTURE OF R124A MUTANT OF CYTOCHROME C' FROM ALCALIGENES XYLOSOXIDANS Deposited 2010-07-20 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–127（127 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5；AMMONIUM SULPHATE, TRIS-BUFFER PH 7.5
|
Resolution 1.14 Å R-free 0.161 |
| 2XLM Cytochrome c prime from Alcaligenes xylosoxidans: Ferrous recombinant native with bound NO Deposited 2010-07-21 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–127（127 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | NO NITRIC OXIDE × 2 HEC HEME C × 2 SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5；AMMONIUM SULPHATE, HEPES PH 7.5
|
Resolution 1.19 Å R-free 0.200 |
| 2XLO Cytochrome c prime from Alcaligenes xylosoxidans: Ferrous R124E variant with bound NO Deposited 2010-07-21 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–127（127 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 NO NITRIC OXIDE × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5；AMMONIUM SULPHATE, HEPES PH 7.5
|
Resolution 1.24 Å R-free 0.200 |
| 2XLV Cytochrome c prime from Alcaligenes xylosoxidans: Ferrous R124F variant with bound NO Deposited 2010-07-22 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–127（127 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 NO NITRIC OXIDE × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5；AMMONIUM SULPHATE, TRIS PH 7.5
|
Resolution 1.24 Å R-free 0.213 |
| 2XLW Cytochrome c prime from Alcaligenes xylosoxidans: Ferrous R124Q variant with bound NO Deposited 2010-07-22 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–123（123 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 NO NITRIC OXIDE × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5；AMMONIUM SULPHATE, TRIS PH 7.5
|
Resolution 1.17 Å R-free 0.191 |
| 2XM0 Cytochrome c prime from Alcaligenes xylosoxidans: Ferrous R124K variant Deposited 2010-07-22 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–127（127 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5；AMMONIUM SULPHATE, HEPES PH7.5
|
Resolution 1.25 Å R-free 0.222 |
| 2XM4 Cytochrome c prime from Alcaligenes xylosoxidans: Ferrous R124E variant Deposited 2010-07-23 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–127（127 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.4；AMMONIUM SULPHATE, HEPES PH7.5, pH 7.4
|
Resolution 1.10 Å R-free 0.170 |
| 2YKZ RECOMBINANT NATIVE CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS AT 0.84 A RESOLUTION: RESTRAINED REFINEMENT Deposited 2011-05-30 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–127（127 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 SO4 SULFATE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5；AMMONIUM SULPHATE, TRIS PH 7.5 .
|
Resolution 0.84 Å R-free 0.116 |
| 2YL0 CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: AS ISOLATED L16A VARIANT AT 0.95 A RESOLUTION Deposited 2011-05-30 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–127（127 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 CMO CARBON MONOXIDE × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5；AMMONIUM SULPHATE, TRIS PH 7.5
|
Resolution 0.95 Å R-free 0.150 |
| 2YL1 CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: CARBON MONOOXIDE BOUND L16A VARIANT AT 1.03 A RESOLUTION - Restraint refinement Deposited 2011-05-30 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–127（127 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 CMO CARBON MONOXIDE × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5；AMMONIUM SULPHATE, TRIS PH 7.5
|
Resolution 1.03 Å R-free 0.143 |
| 2YL3 CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: CARBON MONOOXIDE BOUND L16G VARIANT AT 1.04 A RESOLUTION - RESTRAINT REFINED Deposited 2011-05-31 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–127（127 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | CMO CARBON MONOXIDE × 2 HEC HEME C × 2 SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5；AMMONIUM SULPHATE, TRIS PH 7.5.
|
Resolution 1.04 Å R-free 0.146 |
| 2YL7 CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: AS ISOLATED L16G VARIANT AT 0.9 A RESOLUTION - RESTRAINT REFINEMENT Deposited 2011-05-31 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–127（127 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 CMO CARBON MONOXIDE × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5；AMMONIUM SULPHATE, TRIS PH 7.5
|
Resolution 0.90 Å R-free 0.140 |
| 2YLD RECOMBINANT NATIVE CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: CARBON MONOOXIDE BOUND AT 1.25 A Deposited 2011-06-02 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–127（127 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 CMO CARBON MONOXIDE × 2 ASC ASCORBIC ACID × 2 SO4 SULFATE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5；AMMONIUM SULPHATE, TRIS PH 7.5 .
|
Resolution 1.25 Å R-free 0.190 |
| 2YLG CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: ASCORBATE AND CARBON MONOOXIDE BOUND L16A VARIANT AT 1.05 A RESOLUTION Deposited 2011-06-02 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–127（127 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 CMO CARBON MONOXIDE × 2 ASC ASCORBIC ACID × 2 SO4 SULFATE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5；AMMONIUM SULPHATE, TRIS PH 7.5.
|
Resolution 1.05 Å R-free 0.151 |
| 2YLI RECOMBINANT NATIVE CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS IN ITS FERROUS FORM AT 1.45 A Deposited 2011-06-02 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–127（127 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5；AMMONIUM SULPHATE, TRIS PH 7.5
|
Resolution 1.45 Å R-free 0.184 |
| 3ZQV RECOMBINANT NATIVE CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS AT 0.84 A RESOLUTION: NON-RESTRAINED REFINEMENT Deposited 2011-06-12 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–127（127 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 SO4 SULFATE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5；AMMONIUM SULPHATE, PH 7.5
|
Resolution 0.84 Å |
| 3ZQY CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: CARBON MONOOXIDE BOUND L16A VARIANT AT 1.03 A RESOLUTION- NON-RESTRAINT REFINEMENT Deposited 2011-06-12 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
2–127（126 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 CMO CARBON MONOXIDE × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5；AMMONIUM SULPHATE, PH 7.5.
|
Resolution 1.03 Å |
| 3ZTM Cytochrome c prime from alcaligenes xylosoxidans: as isolated L16G variant at 0.9 A resolution: unrestraint refinement Deposited 2011-07-11 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–127（127 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 CMO CARBON MONOXIDE × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5；AMMONIUM SULPHATE, TRIS PH 7.5.
|
Resolution 0.90 Å |
| 3ZTZ Cytochrome c prime from alcaligenes xylosoxidans: carbon monooxide bound L16G variant at 1.05 A resolution: unrestraint refinement Deposited 2011-07-12 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–127（127 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 CMO CARBON MONOXIDE × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5；AMMONIUM SULPHATE, HEPES PH 7.5.
|
Resolution 1.05 Å |
| 3ZWI RECOMBINANT NATIVE CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: CARBON MONOOXIDE BOUND AT 1.25 A:UNRESTRAINT REFINEMENT Deposited 2011-07-31 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–127（127 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 CMO CARBON MONOXIDE × 2 SO4 SULFATE ION × 2 ASC ASCORBIC ACID × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5；AMMONIUM SULPHATE, HEPES BUFFER., pH 7.5
|
Resolution 1.25 Å R-free 0.187 |
| 4CDA Spectroscopically-validated structure of ferric cytochrome c prime from Alcaligenes xylosoxidans Deposited 2013-10-30 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–127（127 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 SO4 SULFATE ION × 4 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5；AMMONIUM SULFATE, HEPES PH 7.5
|
Resolution 1.30 Å R-free 0.179 |
| 4CDV Spectroscopically-validated structure of cytochrome c prime from Alcaligenes xylosoxidans, reduced by X-ray irradiation at 100K Deposited 2013-11-06 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–127（127 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5；AMMONIUM SULFATE, HEPES PH 7.5
|
Resolution 1.17 Å R-free 0.160 |
| 4CDY Spectroscopically-validated structure of cytochrome c prime from Alcaligenes xylosoxidans, reduced by X-ray irradiation at 160K Deposited 2013-11-07 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–127（127 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5；AMMONIUM SULFATE, HEPES PH 7.5
|
Resolution 1.77 Å R-free 0.239 |
| 4CIP Spectroscopically-validated structure of ferrous cytochrome c prime from Alcaligenes xylosoxidans, reduced using ascorbate Deposited 2013-12-13 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–127（127 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 ASC ASCORBIC ACID × 2 SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5；AMMONIUM SULFATE, HEPES PH 7.5
|
Resolution 1.22 Å R-free 0.171 |
| 4CJG Spectroscopically validated structure of the 5 coordinate proximal NO adduct of cytochrome c prime from Alcaligenes xylosoxidans Deposited 2013-12-20 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–127（127 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 NO NITRIC OXIDE × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5；AMMONIUM SULPHATE, HEPES PG 7.5
|
Resolution 1.26 Å R-free 0.195 |
| 4CJO Spectroscopically-validated structure of ferrous cytochrome c prime from Alcaligenes xylosoxidans, reduced at 180K using X-rays Deposited 2013-12-21 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–127（127 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5；AMMONIUM SULPHATE, HEPES PH 7.5
|
Resolution 1.55 Å R-free 0.251 |
| 4D4N Nitrosyl complex of the D121A variant of cytochrome c prime from Alcaligenes xylosoxidans Deposited 2014-10-30 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–127（127 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 NO NITRIC OXIDE × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5；AMMONIUM SULFATE, HEPES PH 7.5
|
Resolution 1.45 Å R-free 0.201 |
| 4D4X Nitrosyl complex of the D121I variant of cytochrome c prime from Alcaligenes xylosoxidans Deposited 2014-10-31 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–127（127 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 NO NITRIC OXIDE × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5；AMMONIUM SULFATE, HEPES PH 7.5
|
Resolution 1.30 Å R-free 0.214 |
| 4WGY Crystal Structure of Cytochrome c' from Alcaligenes xylosoxidans NCIMB 11015 at pH 10.4 Deposited 2014-09-19 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–127（127 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 10.4；293 K；24 % PEG4000, 100 mM CAPS, 50 mM magnesium chloride
|
Resolution 1.48 Å R-free 0.173 |
| 4WGZ Crystal Structure of Cytochrome c' from Alcaligenes xylosoxidans NCIMB 11015 at pH 6.0 Deposited 2014-09-19 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–127（127 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE；pH 6；293 K；12 % PEG4000, 100 mM potassium phosphate, 1 mM sodium azide
|
Resolution 1.11 Å R-free 0.162 |
| 5AGF Nitrosyl complex of the D121Q variant of cytochrome c prime from Alcaligenes xylosoxidans Deposited 2015-01-30 | Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
2–127（126 aa）
|
Mutation：YES Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 NO NITRIC OXIDE × 2 SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5；AMMONIUM SULFATE, HEPES, pH 7.5
|
Resolution 1.09 Å R-free 0.185 |
| 5JLI Nitric oxide complex of the L16A mutant of cytochrome c prime from Alcaligenes xylosoxidans Deposited 2016-04-27 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–127（127 aa）
|
Mutation：L16A Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 ASC ASCORBIC ACID × 2 SO4 SULFATE ION × 4 NO NITRIC OXIDE × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；294 K；2.2 M Ammonium sulfate, 0.1 M HEPES pH 7.5
|
Resolution 1.55 Å R-free 0.214 |
| 5JP7 Ferrous Leu 16 Val mutant of cytochrome c prime from Alcaligenes xylosoxidans Deposited 2016-05-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
2–126（125 aa）
|
Mutation：L16V Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；294 K；2.2 M Ammonium sulfate
0.1 M HEPES pH 7.5
|
Resolution 1.26 Å R-free 0.215 |
| 5JRA Nitric oxide complex of the L16V mutant of cytochrome c prime from Alcaligenes xylosoxidans Deposited 2016-05-06 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
2–126（125 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 ASC ASCORBIC ACID × 2 SO4 SULFATE ION × 2 NO NITRIC OXIDE × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；294 K；2.2M Ammonium sulfate
0.1 M HEPES pH 7.5
|
Resolution 1.38 Å R-free 0.186 |
| 5JS5 Nitric oxide complex of the L16F mutant of cytochrome c prime from Alcaligenes xylosoxidans Deposited 2016-05-07 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–125（125 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 ASC ASCORBIC ACID × 2 NO NITRIC OXIDE × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；294 K；2.2M Ammonium sulfate
0.1M Hepes pH 7.5
|
Resolution 1.70 Å R-free 0.258 |
| 5JSL The L16F mutant of cytochrome c prime from Alcaligenes xylosoxidans: Ferrous form Deposited 2016-05-08 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–126（126 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 ASC ASCORBIC ACID × 2 SO4 SULFATE ION × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；294 K；2.2 M Ammonium sulfate, 0.1 M HEPES pH 7.5
|
Resolution 1.25 Å R-free 0.179 |
| 5JT4 L16A mutant of cytochrome c prime from Alcaligenes xylosoxidans: Ferrous state Deposited 2016-05-09 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–125（125 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 ASC ASCORBIC ACID × 2 SO4 SULFATE ION × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；294 K；2.2M Ammonium sulfate
0.1 M HEPES pH 7.5
|
Resolution 1.25 Å R-free 0.191 |
| 5JUA Nitric oxide complex of the L16I mutant of cytochrome c prime from Alcaligenes xylosoxidans Deposited 2016-05-10 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–126（126 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 NO NITRIC OXIDE × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；294 K；2.2 M Ammonium sulfate, 0.1M HEPES pH 7.5
|
Resolution 1.13 Å R-free 0.187 |
| 5JVE L16I mutant of cytochrome c prime from Alcaligenes xylosoxidans: Ferrous state Deposited 2016-05-11 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–125（125 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；294 K；2.2M Ammonium sulfate, 0.1 M HEPES pH 7.5
|
Resolution 1.12 Å R-free 0.181 |
| 5NC0 The 0.91 A resolution structure of the L16G mutant of cytochrome c prime from Alcaligenes xylosoxidans, complexed with nitric oxide Deposited 2017-03-02 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric |
Chain A
1–127（127 aa）
|
Mutation：L16G Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 2 NO NITRIC OXIDE × 2 NO3 NITRATE ION × 2 NO2 NITRITE ION × 4 SO4 SULFATE ION × 8 EDO 1,2-ETHANEDIOL × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；298 K；AMMONIUM SULPHATE, TRIS PH 7.5
|
Resolution 0.91 Å R-free 0.132 |
| 5NGX The 1.06 A resolution structure of the L16G mutant of ferric cytochrome c prime from Alcaligenes xylosoxidans, complexed with nitrite Deposited 2017-03-20 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric |
Chain A
1–126（126 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | HEC HEME C × 1 NO2 NITRITE ION × 1 GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；298 K；50 mM sodium nitrite, 2.2 M ammonium sulphate and 0.1 M HEPES, pH 7.5
|
Resolution 1.06 Å R-free 0.200 |
50 other PDB entries and 50 assemblies. Open the comparison page and filter oligomeric states
View Construct and Data Evidence
| UniProt name | CYCP_ALCXX |
| Isoform | — |
| PDB entities | 1 |
| Chains and sequence ranges | Author chain A； PDBConstruct 2–127； UniProt 2–127 |
