1dk3
REFINED SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF DNA POLYMERASE BETA
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 1dk3 |
| deposition_date | 1999-12-06 |
| title | REFINED SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF DNA POLYMERASE BETA |
| keywords | ;DNA-BINDING, DEOXYRIBOSE 5'-PHOSPHATE LYASE, NUCLEOTIDYLTRANSFERASE, TRANSFERASE ;; TRANSFERASE |
| method | SOLUTION NMR |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 15.46 Å |
| rg_electron | 14.28 Å |
| i0 | 1917450.00 |
| molecular_weight | 9604.0 kDa |
| excluded_volume | 12248 ų |
| envelope_volume | 15877 ų |
| shell_volume | 10084 ų |
| envelope_diameter | 56.7 Å |
| shell_rg | 19.04 Å |
| envelope_rg | 14.82 Å |
| shape_rg | 14.20 Å |
| total_rg | 15.70 Å |
| total_atoms | 1397 |
| n_residues | 87 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 59.5 Å |
| rg_real | 15.43 Å |
| rg_real_error | 0.60 Å |
| i0_real | 1.9170e+06 |
| i0_real_error | 2.5320e+04 |
| rg_reciprocal | 15.43 Å |
| i0_reciprocal | 1917000.0000 |
| total_estimate | 0.8134 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 18.8 Å |
| skewness | 0.252 |
| kurtosis | -0.213 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 248000.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.582; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.824; Smooth: 1.000 |