1dqb
NMR STRUCTURE OF THROMBOMODULIN EGF(4-5)
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 1dqb |
| deposition_date | 2000-01-03 |
| title | NMR STRUCTURE OF THROMBOMODULIN EGF(4-5) |
| keywords | THROMBIN, EGF MODULE, ANTICOAGULANT, GLYCOSYLATION, MEMBRANE PROTEIN; MEMBRANE PROTEIN |
| method | SOLUTION NMR |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 14.97 Å |
| rg_electron | 15.13 Å |
| i0 | 242797000.00 |
| molecular_weight | 116300.0 kDa |
| excluded_volume | 139120 ų |
| envelope_volume | 31545 ų |
| shell_volume | 15504 ų |
| envelope_diameter | 63.0 Å |
| shell_rg | 23.21 Å |
| envelope_rg | 18.05 Å |
| shape_rg | 15.16 Å |
| total_rg | 15.29 Å |
| total_atoms | 15000 |
| n_residues | 996 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 58.2 Å |
| rg_real | 15.12 Å |
| rg_real_error | 0.50 Å |
| i0_real | 2.4280e+08 |
| i0_real_error | 2.9720e+06 |
| rg_reciprocal | 15.11 Å |
| i0_reciprocal | 242800000.0000 |
| total_estimate | 0.7600 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 14.7 Å |
| skewness | 0.553 |
| kurtosis | -0.167 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 554400.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.528; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.296; Smooth: 0.997 |