Crystal structure of HIV-1 capsid protein (p24) in complex with Fab13B5

entry_id	1e6j
deposition_date	2000-08-18
title	Crystal structure of HIV-1 capsid protein (p24) in complex with Fab13B5
keywords	;HIV CAPSID PROTEIN (P24), P24, FAB, HIV-1, VIRUS ASSEMBLY, CAPSID, CA, ANTIGEN, ANTIBODY, PROTEIN-PROTEIN INTERACTIONS, VIRAL PROTEIN ;; VIRAL PROTEIN
method	X-RAY DIFFRACTION

rg_guinier	41.35 Å
rg_electron	42.50 Å
i0	78244500.00
molecular_weight	69916.0 kDa
excluded_volume	87125 ų
envelope_volume	127680 ų
shell_volume	30808 ų
envelope_diameter	156.7 Å
shell_rg	37.30 Å
envelope_rg	43.43 Å
shape_rg	42.47 Å
total_rg	42.24 Å
total_atoms	4976
n_residues	639
n_harmonics	20
q_range	— – 0.5000 Å−1
n_points	101
shell_type	directional
solvent_density	0.3340 e/ų
contrast_shell	0.0300 e/ų
crysol_version	4.1.3

dmax	154.8 Å
rg_real	42.29 Å
rg_real_error	2.10 Å
i0_real	7.8240e+07
i0_real_error	1.5420e+06
rg_reciprocal	41.36 Å
i0_reciprocal	78170000.0000
total_estimate	0.6495
solution_quality	REASONABLE a REASONABLE solution
n_peaks	3
r_peak_primary	28.5 Å
skewness	0.770
kurtosis	-0.215
angular_range	— – 0.1900 Å−1
current_alpha	0.0000
highest_alpha	4685000.0000
n_real_points	39
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.242; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.142; Smooth: 0.571

Unit Cell

length_a	193.080 Å
length_b	45.600 Å
length_c	132.470 Å
angle_alpha	90.00 °
angle_beta	132.41 °
angle_gamma	90.00 °
z_pdb	4

Symmetry

space_group	C 1 2 1
int_tables_number	5
crystal_system	—

Refinement

resolution	3.000 Å
resolution_low	15.000 Å
r_factor	0.2100
r_work	0.2100
r_free	0.2840

Diffraction

temperature

100.0 K

Files (7)

• pr_distribution /app/data/pr_computation/e6/1e6j/pr_distribution.json
• pr_output /app/data/pr_computation/e6/1e6j/1e6j.pr.out
• pr_plot /app/data/visualization/pr_computation/e6/1e6j/1e6j_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/e6/1e6j/1e6j.dat
• saxs_fit /app/data/saxs_computation/e6/1e6j/1e6j.fit
• saxs_log /app/data/saxs_computation/e6/1e6j/1e6j.log
• saxs_plot /app/data/visualization/saxs_computation/e6/1e6j/1e6j_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/e6/1e6j/1e6j.fit
pddf	/app/data/pr_computation/e6/1e6j/1e6j.pr.out
profile	/app/data/saxs_computation/e6/1e6j/1e6j.dat