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9dwd

Gag CA-SP1 immature lattice bound with Lenacapavir from enveloped virus like particles (T8I)

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Gag

Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)

UniProt P04591

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein homooligomer Homooligomer Protein 18 Lenacapavir × 18 INOSITOL HEXAKISPHOSPHATE × 1 Consistent with protein count

Other States of the Same Protein in the Database

Monomer
5i1r

1 assemblies

Homodimer
6ec2 6ec2 6eco

3 assemblies

Homotetramer

None

Other homooligomers
9cwv 9d6c 9dwd 9e39

4 assemblies

Heteromeric or nucleic-acid complex
1e6j 1tsq 1tsu 6cpl 6cpn 6cpo 6cpo 6cqj 6cqj 6cqj 6cql 6cqn

18 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name GAG_HV1H2
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 1–232； UniProt 141–372 Author chain B； PDBConstruct 1–232； UniProt 141–372 Author chain C； PDBConstruct 1–232； UniProt 141–372 Author chain D； PDBConstruct 1–232； UniProt 141–372 Author chain E； PDBConstruct 1–232； UniProt 141–372 Author chain F； PDBConstruct 1–232； UniProt 141–372 Author chain G； PDBConstruct 1–232； UniProt 141–372 Author chain H； PDBConstruct 1–232； UniProt 141–372 Author chain I； PDBConstruct 1–232； UniProt 141–372 Author chain J； PDBConstruct 1–232； UniProt 141–372 Author chain K； PDBConstruct 1–232； UniProt 141–372 Author chain L； PDBConstruct 1–232； UniProt 141–372 Author chain M； PDBConstruct 1–232； UniProt 141–372 Author chain N； PDBConstruct 1–232； UniProt 141–372 Author chain O； PDBConstruct 1–232； UniProt 141–372 Author chain P； PDBConstruct 1–232； UniProt 141–372 Author chain Q； PDBConstruct 1–232； UniProt 141–372 Author chain R； PDBConstruct 1–232； UniProt 141–372

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id9dwd
Deposition date deposition_date2024-10-09
Structure title titleGag CA-SP1 immature lattice bound with Lenacapavir from enveloped virus like particles (T8I)
Keywords keywordsHIV-1, Gag, CA-SP1, Inhibitor, virion assembly, VIRAL PROTEIN; VIRAL PROTEIN
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9dwd__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9dwd__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

9dwd__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）54.04 Å
Rg (electron density)53.48 Å
Total Rg53.70 Å
Atom count32766
Residues4122
Excluded volume583060 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 9dwd__assembly_1__model_1 octadecameric （18） Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (3)

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7. Citations (2)