SAXSdb — 1eo8

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1. Structure Basics

entry_id	1eo8
deposition_date	2000-03-22
title	INFLUENZA VIRUS HEMAGGLUTININ COMPLEXED WITH A NEUTRALIZING ANTIBODY
keywords	;COMPLEX (HEMAGGLUTININ-IMMMUNOGLOBULIN), HEMAGGLUTININ, IMMUNOGLOBULIN, VIRAL PROTEIN, IMMUNE SYSTEM COMPLEX, Viral protein-Immune system COMPLEX ;; Viral protein/Immune system
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	42.05 Å
rg_electron	42.26 Å
i0	170295000.00
molecular_weight	103090.0 kDa
excluded_volume	127890 Å³
envelope_volume	173290 Å³
shell_volume	39073 Å³
envelope_diameter	159.2 Å
shell_rg	40.79 Å
envelope_rg	42.29 Å
shape_rg	42.23 Å
total_rg	42.27 Å
total_atoms	7248
n_residues	921
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	150.1 Å
rg_real	42.59 Å
rg_real_error	1.64 Å
i0_real	1.7030e+08
i0_real_error	3.3650e+06
rg_reciprocal	42.05 Å
i0_reciprocal	170200000.0000
total_estimate	0.7945
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	39.5 Å
skewness	0.632
kurtosis	-0.132
angular_range	— – 0.1900 Å⁻¹
current_alpha	0.0000
highest_alpha	8878000.0000
n_real_points	39
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.691; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.692; Smooth: 0.559

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4. Crystallography & Experiment

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5. Entities & Polymer Info (8)

Entity 1 polymer

description	HEMAGGLUTININ (HA1 CHAIN)
formula_weight	36065.5 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	7357

QDLPGNDNSTATLCLGHHAVPNGTLVKTITDDQIEVTNATELVQSSSTGKICNNPHRILDGIDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEGFTWTGVTQNGGSNACKRGPGSGFFSRLNWLTKSGSTYPVLNVTMPNNDNFDKLYIWGIHHPSTNQEQTSLYVQASGRVTVSTRRSQQTIIPNIGSRPWVRGLSSRISIYWTIVKPGDVLVINSNGNLIAPRGYFKMRTGKSSIMRSDAPIDTCISECITPNGSIPNDKPFQNVNKITYGACPKYVKQNTLKLATGMRNVPEKQT

Entity 2 polymer

description	HEMAGGLUTININ (HA2 CHAIN)
formula_weight	20212.3 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	B

GLFGAIAGFIENGWEGMIDGWYGFRHQNSEGTGQAADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTRRQLRENAEEMGNGCFKIYHKCDNACIESIRNGTYDHDVYRDEALNNRFQIKG

Entity 3 polymer

description	ANTIBODY (LIGHT CHAIN)
formula_weight	23097.6 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	L

QIILTQSPAIMSASPGEKVTMTCSASSDISYMHWYQQKSDTSPKIWIYDTSKLASGVPARFSGSGSGTSYSLTISTMEAEDAATYYCHQRSSYPTFGGGTKLEIKRADAAPTVSIFPPSKIQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN

Entity 4 polymer

description	ANTIBODY (HEAVY CHAIN)
formula_weight	23407.3 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	H

QVQLQQSGAELMKPGPSVKISCKATGYSFSTYFIEWIRQRPGHGLEWIGEILPGSDNTNFNEKFKDRATFTADTPSNTAYMQLSSLTSEDSAVYYCARPTGRLWFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVP

Entity 5 branched

description	alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
formula_weight	586.5 kDa
src_method	man
entity_count	1

Entity 6 branched

description	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
formula_weight	424.4 kDa
src_method	man
entity_count	1

Entity 7 non-polymer

description	2-acetamido-2-deoxy-beta-D-glucopyranose
formula_weight	221.2 kDa
src_method	man
entity_count	2

Entity 8 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	109

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6. Citations (3)

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length_a	138.150 Å
length_b	138.150 Å
length_c	129.500 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	6

space_group	P 3 2 1
int_tables_number	150
crystal_system	—

resolution	2.800 Å
resolution_low	7.000 Å
r_factor	—
r_work	0.1960
r_free	0.2980

fit	/app/data/saxs_computation/eo/1eo8/1eo8.fit
pddf	/app/data/pr_computation/eo/1eo8/1eo8.pr.out
profile	/app/data/saxs_computation/eo/1eo8/1eo8.dat

INFLUENZA VIRUS HEMAGGLUTININ COMPLEXED WITH A NEUTRALIZING ANTIBODY

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (8)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 polymer

Polymer

Entity 4 polymer

Polymer

Entity 5 branched

Entity 6 branched

Entity 7 non-polymer

Entity 8 water

6. Citations (3)

7. Files & Curves (10)

Files (7)

Curves (3)