1qu1

CRYSTAL STRUCTURE OF EHA2 (23-185)

Method: X-RAY DIFFRACTION Dmax: 218.8 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

PROTEIN (INFLUENZA RECOMBINANT HA2 CHAIN)

Influenza A virus

UniProt P03437

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 3 PDB declaration: trimeric(3) Consistent with protein copy count Chain A; UniProt 376–530 Chain B; UniProt 376–530 Chain C; UniProt 376–530 Not recorded No other associated polymer X-RAY DIFFRACTION X-ray crystallization conditions:pH 4.4;2% PEG 4000, 30-150 MM NACL, pH 4.40 Resolution 1.90 Å R-free 0.250
2 Protein homooligomer Homooligomer Protein × 3 PDB declaration: trimeric(3) Consistent with protein copy count Chain D; UniProt 376–530 Chain E; UniProt 376–530 Chain F; UniProt 376–530 Not recorded No other associated polymer X-RAY DIFFRACTION X-ray crystallization conditions:pH 4.4;2% PEG 4000, 30-150 MM NACL, pH 4.40 Resolution 1.90 Å R-free 0.250

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

42 other PDB entries and 47 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name HEMA_IAAIC
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–155; UniProt 376–530 Author chain B; PDBConstruct 1–155; UniProt 376–530 Author chain C; PDBConstruct 1–155; UniProt 376–530 Author chain D; PDBConstruct 1–155; UniProt 376–530 Author chain E; PDBConstruct 1–155; UniProt 376–530 Author chain F; PDBConstruct 1–155; UniProt 376–530

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 1qu1

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 1qu1
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2. Structure Basics 2. Structure Basics

Entry ID entry_id1qu1
Deposition date deposition_date1999-07-05
Structure title titleCRYSTAL STRUCTURE OF EHA2 (23-185)
Keywords keywordsHEMAGGLUTININ, LOW-PH, VIRUS/VIRAL PROTEIN, Viral protein; VIRAL PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier63.06
Radius of gyration Rg (electron density) rg_electron65.89
Forward intensity I(0) i0165779000.00
Molecular weight molecular_weight101920.0 kDa
Excluded volume excluded_volume125630 ų
Envelope volume envelope_volume194700 ų
Hydration-shell volume shell_volume30253 ų
Envelope diameter envelope_diameter234.4
Shell Rg shell_rg46.90
Envelope Rg envelope_rg66.67
Shape Rg shape_rg65.88
Total Rg total_rg65.34
Total atoms total_atoms7173
Residues n_residues874
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax218.8
Rg (real space) rg_real65.08
Rg uncertainty (real space) rg_real_error2.51
I(0) (real space) i0_real1.6580e+08
I(0) uncertainty (real space) i0_real_error3.7370e+06
Rg (reciprocal space) rg_reciprocal61.28
I(0) (reciprocal space) i0_reciprocal164700000.0000
Solution quality estimate total_estimate0.5808
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks3
Primary peak position r_peak_primary26.3
Skewness Skewness skewness0.611
Kurtosis Kurtosis kurtosis-0.503
Angular range angular_range— – 0.1250 −1
Current regularization parameter α current_alpha0.0002
Highest regularization parameter α highest_alpha3447000.0000
Real-space data points n_real_points26
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.096; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.080; Smooth: 0.178

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (2)

7. Fold Classification (SCOP + CATH) 12 domains

SCOP 2.08 (6 domains)

Domain ID domain_idd1qu1a_
Class classh — Coiled coil proteins
Fold Fold foldh.3 — Stalk segment of viral fusion proteins
Superfamily Superfamily superfamilyh.3.1 — Influenza hemagglutinin (stalk)
Family Family familyh.3.1.1 — Influenza hemagglutinin (stalk)
Domain ID domain_idd1qu1b_
Class classh — Coiled coil proteins
Fold Fold foldh.3 — Stalk segment of viral fusion proteins
Superfamily Superfamily superfamilyh.3.1 — Influenza hemagglutinin (stalk)
Family Family familyh.3.1.1 — Influenza hemagglutinin (stalk)
Domain ID domain_idd1qu1c_
Class classh — Coiled coil proteins
Fold Fold foldh.3 — Stalk segment of viral fusion proteins
Superfamily Superfamily superfamilyh.3.1 — Influenza hemagglutinin (stalk)
Family Family familyh.3.1.1 — Influenza hemagglutinin (stalk)
Domain ID domain_idd1qu1d_
Class classh — Coiled coil proteins
Fold Fold foldh.3 — Stalk segment of viral fusion proteins
Superfamily Superfamily superfamilyh.3.1 — Influenza hemagglutinin (stalk)
Family Family familyh.3.1.1 — Influenza hemagglutinin (stalk)
Domain ID domain_idd1qu1e_
Class classh — Coiled coil proteins
Fold Fold foldh.3 — Stalk segment of viral fusion proteins
Superfamily Superfamily superfamilyh.3.1 — Influenza hemagglutinin (stalk)
Family Family familyh.3.1.1 — Influenza hemagglutinin (stalk)
Domain ID domain_idd1qu1f_
Class classh — Coiled coil proteins
Fold Fold foldh.3 — Stalk segment of viral fusion proteins
Superfamily Superfamily superfamilyh.3.1 — Influenza hemagglutinin (stalk)
Family Family familyh.3.1.1 — Influenza hemagglutinin (stalk)

CATH v4.4 (6 domains)

Domain ID domain_id1qu1A00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology20 — Hemagglutinin Ectodomain; Chain B
Homologous superfamily homologous superfamily10
Domain ID domain_id1qu1B00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology20 — Hemagglutinin Ectodomain; Chain B
Homologous superfamily homologous superfamily10
Domain ID domain_id1qu1C00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology20 — Hemagglutinin Ectodomain; Chain B
Homologous superfamily homologous superfamily10
Domain ID domain_id1qu1D00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology20 — Hemagglutinin Ectodomain; Chain B
Homologous superfamily homologous superfamily10
Domain ID domain_id1qu1E00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology20 — Hemagglutinin Ectodomain; Chain B
Homologous superfamily homologous superfamily10
Domain ID domain_id1qu1F00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology20 — Hemagglutinin Ectodomain; Chain B
Homologous superfamily homologous superfamily10

8. Citations (1)

9. Files and Curves (10)