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1jwy

CRYSTAL STRUCTURE OF THE DYNAMIN A GTPASE DOMAIN COMPLEXED WITH GDP, DETERMINED AS MYOSIN FUSION

Method: X-RAY DIFFRACTION Dmax: 150.2 Å Quality: REASONABLE

SAXS 散射曲线 SAXS Profile

SAXS profile for 1jwy

P(r) 距离分布 P(r) Distribution

P(r) distribution for 1jwy
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1. 结构基本信息 1. Structure Basics

条目编号 entry_id1jwy
沉积日期 deposition_date2001-09-05
结构标题 titleCRYSTAL STRUCTURE OF THE DYNAMIN A GTPASE DOMAIN COMPLEXED WITH GDP, DETERMINED AS MYOSIN FUSION
关键词 keywordsdynamin, GTPase, GDP, myosin, fusion-protein, Dictyostelium, HYDROLASE; HYDROLASE
实验方法 methodX-RAY DIFFRACTION
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2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

回转半径 Rg (Guinier) rg_guinier41.85 Å
回转半径 Rg (电子) rg_electron42.38 Å
零角强度 I(0) i0208418000.00
分子量 molecular_weight118740.0 kDa
排除体积 excluded_volume149260 ų
包络体积 envelope_volume200960 ų
水化壳体积 shell_volume44059 ų
包络直径 envelope_diameter159.1 Å
壳层 Rg shell_rg41.86 Å
包络 Rg envelope_rg42.37 Å
形状 Rg shape_rg42.32 Å
总 Rg total_rg42.54 Å
总原子数 total_atoms8366
残基数 n_residues1039
球谐函数阶数 n_harmonics20
q 范围 q_range— – 0.5000 Å−1
数据点数 n_points101
壳层类型 shell_typedirectional
溶剂电子密度 solvent_density0.3340 e/ų
壳层衬度 contrast_shell0.0300 e/ų
CRYSOL 版本 crysol_version4.1.3
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3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

最大尺寸 Dmax dmax150.2 Å
Rg (实空间) rg_real42.44 Å
Rg 误差 (实空间) rg_real_error1.57 Å
I(0) (实空间) i0_real2.0840e+08
I(0) 误差 (实空间) i0_real_error4.0600e+06
Rg (倒空间) rg_reciprocal41.85 Å
I(0) (倒空间) i0_reciprocal208300000.0000
解质量估计 total_estimate0.5246
解质量评级 solution_quality REASONABLE a REASONABLE solution
P(r) 峰数 n_peaks1
主峰位置 r_peak_primary35.6 Å
偏度 Skewness skewness0.672
峰度 Kurtosis kurtosis-0.238
角度范围 angular_range— – 0.1900 Å−1
当前正则化参数 α current_alpha0.0000
最高正则化参数 α highest_alpha39790000.0000
实空间数据点数 n_real_points39
GNOM 版本 gnom_version4.1.3
质量判据 quality_criteria AN1: 0.000; Oscil: 0.472; Stabil: 1.000; Sysdev: 0.046; Positv: 1.000; Valcen: 0.617; Smooth: 0.645
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合体信息 (6)

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6. 折叠分类 (SCOP + CATH) 7 domains

SCOP 2.08 (4 domains)

结构域编号 domain_idd1jwya1
类 Class classb — All beta proteins
折叠类型 Fold foldb.34 — SH3-like barrel
超家族 Superfamily superfamilyb.34.3 — Myosin S1 fragment, N-terminal domain
家族 Family familyb.34.3.1 — Myosin S1 fragment, N-terminal domain
结构域编号 domain_idd1jwya2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
超家族 Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
家族 Family familyc.37.1.9 — Motor proteins
结构域编号 domain_idd1jwya3
类 Class classl — Artifacts
折叠类型 Fold foldl.1 — Tags
超家族 Superfamily superfamilyl.1.1 — Tags
家族 Family familyl.1.1.1 — Tags
结构域编号 domain_idd1jwya4
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
超家族 Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
家族 Family familyc.37.1.8 — G proteins

CATH v4.4 (3 domains)

结构域编号 domain_id1jwyA01
类 Class class2 — Mainly Beta
架构 Architecture architecture30 — Roll
拓扑 Topology topology30 — SH3 type barrels.
同源超家族 H-superfamily homologous superfamily360 — Myosin S1 fragment, N-terminal
结构域编号 domain_id1jwyA02
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology850 — Kinesin
同源超家族 H-superfamily homologous superfamily10 — Kinesin motor domain
结构域编号 domain_id1jwyA04
类 Class class1 — Mainly Alpha
架构 Architecture architecture20 — Up-down Bundle
拓扑 Topology topology58 — Methane Monooxygenase Hydroxylase; Chain G, domain 1
同源超家族 H-superfamily homologous superfamily530 —
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7. 引用文献 (1)

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8. 文件与曲线 (10)