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1GD5
SOLUTION STRUCTURE OF THE PX DOMAIN FROM HUMAN P47PHOX NADPH OXIDASE
Deposited 2000-09-14
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Different construct
Different oligomeric state
Different experimental conditions
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Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
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Chain A
1–128(128 aa)
Fragment:PX DOMAIN
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Not recorded
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No recorded non-water small molecule
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SOLUTION NMR
NMR measurement conditions
pH 5.5;293 K;Ionic strength (raw mmCIF value) 0;Pressure 1
NMR sample composition
0.6mM PX domain U-15N,13C; 5mM Na-MES buffer; 95% H2O, 5% D2O | 95% H2O/5% D2O
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Resolution not provided
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1KQ6
p47phox PX domain
Deposited 2002-01-04
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Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
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Chain A
1–141(141 aa)
Fragment:PX domain
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Non-standard monomer:Yes (specific site not provided by mmCIF)
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SO4 SULFATE ION × 3
GOL GLYCEROL × 10
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X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.6;291 K;PEG 550 DME, glycerol, ammonium sulfate, natrium citrate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 291K
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Resolution 1.18 Å
R-free 0.185
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1NG2
Structure of autoinhibited p47phox
Deposited 2002-12-16
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Different construct
Different oligomeric state
Different experimental method
Different experimental conditions
Different structure-quality metrics
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Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
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Chain A
156–340(185 aa)
Fragment:residues 156-340
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Not recorded
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No recorded non-water small molecule
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X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;291 K;PEG 3000, sodium citrate, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K
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Resolution 1.70 Å
R-free 0.233
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1NG2
Structure of autoinhibited p47phox
Deposited 2002-12-16
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Different construct
Different oligomeric state
Different experimental method
Different experimental conditions
Different structure-quality metrics
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Assembly 2
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
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Chain A
156–340(185 aa)
Fragment:residues 156-340
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Not recorded
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No recorded non-water small molecule
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X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5;291 K;PEG 3000, sodium citrate, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K
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Resolution 1.70 Å
R-free 0.233
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1O7K
human p47 PX domain complex with sulphates
Deposited 2002-11-07
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Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
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Assembly 1
Protein homooligomer
Homooligomer;Protein × 3
PDB declaration: trimeric
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Chain A
1–123(123 aa)
Fragment:PX DOMAIN, RESIDUES 1-123
Chain B
1–123(123 aa)
Fragment:PX DOMAIN, RESIDUES 1-123
Chain C
1–123(123 aa)
Fragment:PX DOMAIN, RESIDUES 1-123
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Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
Non-standard monomer:Yes (specific site not provided by mmCIF)
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SO4 SULFATE ION × 7
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X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8.5;1 M AMMONIUM SULPHATE, 0.1M TRIS PH 8.5, 12% GLYCEROL
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Resolution 2.00 Å
R-free 0.254
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1OV3
Structure of the p22phox-p47phox complex
Deposited 2003-03-25
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Different construct
Different mutation/modification
Different oligomeric state
Different experimental method
Different experimental conditions
Different structure-quality metrics
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Assembly 1
Protein heterocomplex
Heteromer;Protein × 4
PDB declaration: tetrameric
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Chain A
156–285(130 aa)
Fragment:Residues 156-285
Chain B
156–285(130 aa)
Fragment:Residues 156-285
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Not recorded
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No recorded non-water small molecule
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X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;291 K;1 M Na-Citrate, 0.1 M Na-cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
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Resolution 1.80 Å
R-free 0.275
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1OV3
Structure of the p22phox-p47phox complex
Deposited 2003-03-25
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Different construct
Different mutation/modification
Different oligomeric state
Different experimental method
Different experimental conditions
Different structure-quality metrics
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Assembly 2
Protein heterocomplex
Heteromer;Protein × 8
PDB declaration: octameric
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Chain A
156–285(130 aa)
Fragment:Residues 156-285
Chain B
156–285(130 aa)
Fragment:Residues 156-285
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Not recorded
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No recorded non-water small molecule
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X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;291 K;1 M Na-Citrate, 0.1 M Na-cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
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Resolution 1.80 Å
R-free 0.275
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1UEC
Crystal structure of autoinhibited form of tandem SH3 domain of p47phox
Deposited 2003-05-11
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Different construct
Different oligomeric state
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein monomer
Monomer;Protein × 1
PDB declaration: monomeric
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Chain A
151–340(190 aa)
Fragment:autoinhibited tandem SH3 domain, redidues 151-340
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Not recorded
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No recorded non-water small molecule
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X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 5.4;293 K;16% PEG 6000, 0.1M soduim citrate, 50mM sodium fluoride, pH 5.4, VAPOR DIFFUSION, SITTING DROP, temperature 293K
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Resolution 1.82 Å
R-free 0.236
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1UEC
Crystal structure of autoinhibited form of tandem SH3 domain of p47phox
Deposited 2003-05-11
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Different construct
Different oligomeric state
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein homooligomer
Homooligomer;Protein × 2
PDB declaration: dimeric
|
Chain A
151–340(190 aa)
Fragment:autoinhibited tandem SH3 domain, redidues 151-340
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Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 5.4;293 K;16% PEG 6000, 0.1M soduim citrate, 50mM sodium fluoride, pH 5.4, VAPOR DIFFUSION, SITTING DROP, temperature 293K
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Resolution 1.82 Å
R-free 0.236
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1W70
SH3 domain of p40phox complexed with C-terminal polyProline region of p47phox
Deposited 2004-08-26
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Different construct
Different mutation/modification
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
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Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
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Chain C
360–372(13 aa)
Fragment:POLYPROLINE MOTIF, RESIDUES 360-372
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Non-standard monomer:Yes (specific site not provided by mmCIF)
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SO4 SULFATE ION × 1
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X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;293 K;VAPOR DIFFUSION AT 20 DEGRE C AT 14MG/ML OF P40PHOX SH3 WITH A1/5 RATIO WITH POLYPROLINE PEPTIDE, 20 MM HEPES PH 7.5, 150 MM NACL MIXED WITH 100 MM NA-CITRATE/CITRIC ACID PH5, 2.4 M SA
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Resolution 1.46 Å
R-free 0.207
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1W70
SH3 domain of p40phox complexed with C-terminal polyProline region of p47phox
Deposited 2004-08-26
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Different construct
Different mutation/modification
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
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Assembly 2
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
|
Chain D
360–372(13 aa)
Fragment:POLYPROLINE MOTIF, RESIDUES 360-372
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Non-standard monomer:Yes (specific site not provided by mmCIF)
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SO4 SULFATE ION × 3
TFA trifluoroacetic acid × 2
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X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;293 K;VAPOR DIFFUSION AT 20 DEGRE C AT 14MG/ML OF P40PHOX SH3 WITH A1/5 RATIO WITH POLYPROLINE PEPTIDE, 20 MM HEPES PH 7.5, 150 MM NACL MIXED WITH 100 MM NA-CITRATE/CITRIC ACID PH5, 2.4 M SA
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Resolution 1.46 Å
R-free 0.207
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1WLP
Solution Structure Of The P22Phox-P47Phox Complex
Deposited 2004-06-29
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Different construct
Different experimental conditions
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Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
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Chain B
151–286(136 aa)
Fragment:Tandem SH3 domain
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Not recorded
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No recorded non-water small molecule
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SOLUTION NMR
mmCIF provides none of the parsed conditions
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Resolution not provided
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7YXW
Structure of the p22phox A200G mutant in complex with p47phox peptide
Deposited 2022-02-16
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Different construct
Different mutation/modification
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 2
PDB declaration: dimeric
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Chain A
156–285(130 aa)
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Mutation:A200G
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No recorded non-water small molecule
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X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;277 K;0.1 M HEPES pH 7.5, 1.2 M sodium citrate tribasic dihydrate, 1:1 protein:precipitant ratio
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Resolution 2.50 Å
R-free 0.269
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8WEJ
Structure of human phagocyte NADPH oxidase in the activated state
Deposited 2023-09-18
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Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
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Assembly 1
Other combination
Heteromer;Protein × 7
PDB declaration: heptameric
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Chain C
1–286(286 aa)
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Not recorded
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HEM PROTOPORPHYRIN IX CONTAINING FE × 2
NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 2
MG MAGNESIUM ION × 2
NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE × 1
FDA DIHYDROFLAVINE-ADENINE DINUCLEOTIDE × 1
GTP GUANOSINE-5'-TRIPHOSPHATE × 1
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ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
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Resolution 2.79 Å
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