1mg2

MUTATION OF ALPHA PHE55 OF METHYLAMINE DEHYDROGENASE ALTERS THE REORGANIZATION ENERGY AND ELECTRONIC COUPLING FOR ITS ELECTRON TRANSFER REACTION WITH AMICYANIN

Method: X-RAY DIFFRACTION
▼

1. Protein Identity and Related Structures Protein Identity & Related Structures

Methylamine dehydrogenase, heavy chain

Paracoccus denitrificans

UniProt P29894

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 8 Methylamine dehydrogenase, light chain × 2 (P22619) Amicyanin × 2 (P22364) CYTOCHROME C-L × 2 (P29889) PHOSPHATE ION × 4 COPPER (II) ION × 2 SODIUM ION × 2 HEME C × 2 water × 8 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 8 Methylamine dehydrogenase, light chain × 2 (P22619) Amicyanin × 2 (P22364) CYTOCHROME C-L × 2 (P29889) PHOSPHATE ION × 4 COPPER (II) ION × 2 SODIUM ION × 2 HEME C × 2 water × 8 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name DHMH_PARDE
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–390; UniProt 28–417 Author chain E; PDBConstruct 1–390; UniProt 28–417 Author chain I; PDBConstruct 1–390; UniProt 28–417 Author chain M; PDBConstruct 1–390; UniProt 28–417

Methylamine dehydrogenase, light chain

Paracoccus denitrificans

UniProt P22619

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 8 Methylamine dehydrogenase, heavy chain × 2 (P29894) Amicyanin × 2 (P22364) CYTOCHROME C-L × 2 (P29889) PHOSPHATE ION × 4 COPPER (II) ION × 2 SODIUM ION × 2 HEME C × 2 water × 8 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 8 Methylamine dehydrogenase, heavy chain × 2 (P29894) Amicyanin × 2 (P22364) CYTOCHROME C-L × 2 (P29889) PHOSPHATE ION × 4 COPPER (II) ION × 2 SODIUM ION × 2 HEME C × 2 water × 8 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name DHML_PARDE
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–131; UniProt 58–188 Author chain F; PDBConstruct 1–131; UniProt 58–188 Author chain J; PDBConstruct 1–131; UniProt 58–188 Author chain N; PDBConstruct 1–131; UniProt 58–188

Amicyanin

Paracoccus denitrificans

UniProt P22364

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 8 Methylamine dehydrogenase, heavy chain × 2 (P29894) Methylamine dehydrogenase, light chain × 2 (P22619) CYTOCHROME C-L × 2 (P29889) PHOSPHATE ION × 4 COPPER (II) ION × 2 SODIUM ION × 2 HEME C × 2 water × 8 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 8 Methylamine dehydrogenase, heavy chain × 2 (P29894) Methylamine dehydrogenase, light chain × 2 (P22619) CYTOCHROME C-L × 2 (P29889) PHOSPHATE ION × 4 COPPER (II) ION × 2 SODIUM ION × 2 HEME C × 2 water × 8 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name AMCY_PARDE
Isoform —
PDB entities 3
Chains and sequence ranges Author chain C; PDBConstruct 1–105; UniProt 27–131 Author chain G; PDBConstruct 1–105; UniProt 27–131 Author chain K; PDBConstruct 1–105; UniProt 27–131 Author chain O; PDBConstruct 1–105; UniProt 27–131

CYTOCHROME C-L

Paracoccus denitrificans

UniProt P29889

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 8 Methylamine dehydrogenase, heavy chain × 2 (P29894) Methylamine dehydrogenase, light chain × 2 (P22619) Amicyanin × 2 (P22364) PHOSPHATE ION × 4 COPPER (II) ION × 2 SODIUM ION × 2 HEME C × 2 water × 8 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 8 Methylamine dehydrogenase, heavy chain × 2 (P29894) Methylamine dehydrogenase, light chain × 2 (P22619) Amicyanin × 2 (P22364) PHOSPHATE ION × 4 COPPER (II) ION × 2 SODIUM ION × 2 HEME C × 2 water × 8 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name VF12_VACCP
Isoform —
PDB entities 4
Chains and sequence ranges Author chain D; PDBConstruct 1–155; UniProt 631–635 Author chain H; PDBConstruct 1–155; UniProt 631–635 Author chain L; PDBConstruct 1–155; UniProt 631–635 Author chain P; PDBConstruct 1–155; UniProt 631–635

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

▼

2. Structure Basics 2. Structure Basics

Entry ID entry_id1mg2
Deposition date deposition_date2002-08-14
Structure title titleMUTATION OF ALPHA PHE55 OF METHYLAMINE DEHYDROGENASE ALTERS THE REORGANIZATION ENERGY AND ELECTRONIC COUPLING FOR ITS ELECTRON TRANSFER REACTION WITH AMICYANIN
Keywords keywordselectron transfer, methylamine dehydrogenase, cytochrome, blue copper protein, active site mutant, OXIDOREDUCTASE; OXIDOREDUCTASE
Experimental Method methodX-RAY DIFFRACTION
▼

3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

1mg2__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

1mg2__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

1mg2__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)39.79 Å
Rg (electron density)40.31 Å
Total Rg40.40 Å
Atom count11846
Residues1516
Excluded volume208310 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 1mg2__assembly_1__model_1 octameric (8) Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 1mg2__assembly_2__model_1 octameric (8) Success 4.1.3-1-20251215 (887e7ef) View Download
▶

4. Crystallography and Experiment 4. Crystallography & Experiment

▶

5. Entities and Polymers Entities & Polymers (9)

▼

6. Fold Classification (SCOP + CATH) 32 domains

SCOP 2.08 (16 domains)

Domain ID domain_idd1mg2a_
Class classb — All beta proteins
Fold Fold foldb.69 — 7-bladed beta-propeller
Superfamily Superfamily superfamilyb.69.2 — YVTN repeat-like/Quinoprotein amine dehydrogenase
Family Family familyb.69.2.1 — Methylamine dehydrogenase, H-chain
Domain ID domain_idd1mg2b_
Class classg — Small proteins
Fold Fold foldg.21 — Methylamine dehydrogenase, L chain
Superfamily Superfamily superfamilyg.21.1 — Methylamine dehydrogenase, L chain
Family Family familyg.21.1.1 — Methylamine dehydrogenase, L chain
Domain ID domain_idd1mg2c_
Class classb — All beta proteins
Fold Fold foldb.6 — Cupredoxin-like
Superfamily Superfamily superfamilyb.6.1 — Cupredoxins
Family Family familyb.6.1.1 — Plastocyanin/azurin-like
Domain ID domain_idd1mg2d_
Class classa — All alpha proteins
Fold Fold folda.3 — Cytochrome c
Superfamily Superfamily superfamilya.3.1 — Cytochrome c
Family Family familya.3.1.1 — monodomain cytochrome c
Domain ID domain_idd1mg2e_
Class classb — All beta proteins
Fold Fold foldb.69 — 7-bladed beta-propeller
Superfamily Superfamily superfamilyb.69.2 — YVTN repeat-like/Quinoprotein amine dehydrogenase
Family Family familyb.69.2.1 — Methylamine dehydrogenase, H-chain
Domain ID domain_idd1mg2f_
Class classg — Small proteins
Fold Fold foldg.21 — Methylamine dehydrogenase, L chain
Superfamily Superfamily superfamilyg.21.1 — Methylamine dehydrogenase, L chain
Family Family familyg.21.1.1 — Methylamine dehydrogenase, L chain
Domain ID domain_idd1mg2g_
Class classb — All beta proteins
Fold Fold foldb.6 — Cupredoxin-like
Superfamily Superfamily superfamilyb.6.1 — Cupredoxins
Family Family familyb.6.1.1 — Plastocyanin/azurin-like
Domain ID domain_idd1mg2h_
Class classa — All alpha proteins
Fold Fold folda.3 — Cytochrome c
Superfamily Superfamily superfamilya.3.1 — Cytochrome c
Family Family familya.3.1.1 — monodomain cytochrome c
Domain ID domain_idd1mg2i_
Class classb — All beta proteins
Fold Fold foldb.69 — 7-bladed beta-propeller
Superfamily Superfamily superfamilyb.69.2 — YVTN repeat-like/Quinoprotein amine dehydrogenase
Family Family familyb.69.2.1 — Methylamine dehydrogenase, H-chain
Domain ID domain_idd1mg2j_
Class classg — Small proteins
Fold Fold foldg.21 — Methylamine dehydrogenase, L chain
Superfamily Superfamily superfamilyg.21.1 — Methylamine dehydrogenase, L chain
Family Family familyg.21.1.1 — Methylamine dehydrogenase, L chain
Domain ID domain_idd1mg2k_
Class classb — All beta proteins
Fold Fold foldb.6 — Cupredoxin-like
Superfamily Superfamily superfamilyb.6.1 — Cupredoxins
Family Family familyb.6.1.1 — Plastocyanin/azurin-like
Domain ID domain_idd1mg2l_
Class classa — All alpha proteins
Fold Fold folda.3 — Cytochrome c
Superfamily Superfamily superfamilya.3.1 — Cytochrome c
Family Family familya.3.1.1 — monodomain cytochrome c
Domain ID domain_idd1mg2m_
Class classb — All beta proteins
Fold Fold foldb.69 — 7-bladed beta-propeller
Superfamily Superfamily superfamilyb.69.2 — YVTN repeat-like/Quinoprotein amine dehydrogenase
Family Family familyb.69.2.1 — Methylamine dehydrogenase, H-chain
Domain ID domain_idd1mg2n_
Class classg — Small proteins
Fold Fold foldg.21 — Methylamine dehydrogenase, L chain
Superfamily Superfamily superfamilyg.21.1 — Methylamine dehydrogenase, L chain
Family Family familyg.21.1.1 — Methylamine dehydrogenase, L chain
Domain ID domain_idd1mg2o_
Class classb — All beta proteins
Fold Fold foldb.6 — Cupredoxin-like
Superfamily Superfamily superfamilyb.6.1 — Cupredoxins
Family Family familyb.6.1.1 — Plastocyanin/azurin-like
Domain ID domain_idd1mg2p_
Class classa — All alpha proteins
Fold Fold folda.3 — Cytochrome c
Superfamily Superfamily superfamilya.3.1 — Cytochrome c
Family Family familya.3.1.1 — monodomain cytochrome c

CATH v4.4 (16 domains)

Domain ID domain_id1mg2A00
Class class2 — Mainly Beta
Architecture architecture130 — 7 Propeller
Topology topology10 — Methylamine Dehydrogenase; Chain H
Homologous superfamily homologous superfamily10 — YVTN repeat-like/Quinoprotein amine dehydrogenase
Domain ID domain_id1mg2B00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology30 — Electron Transport Ethylamine Dehydrogenase
Homologous superfamily homologous superfamily10 — Methylamine/Aralkylamine dehydrogenase light chain
Domain ID domain_id1mg2C00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily420 — Cupredoxins - blue copper proteins
Domain ID domain_id1mg2D00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology760 — Cytochrome Bc1 Complex; Chain D, domain 2
Homologous superfamily homologous superfamily10 — Cytochrome c-like domain
Domain ID domain_id1mg2E00
Class class2 — Mainly Beta
Architecture architecture130 — 7 Propeller
Topology topology10 — Methylamine Dehydrogenase; Chain H
Homologous superfamily homologous superfamily10 — YVTN repeat-like/Quinoprotein amine dehydrogenase
Domain ID domain_id1mg2F00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology30 — Electron Transport Ethylamine Dehydrogenase
Homologous superfamily homologous superfamily10 — Methylamine/Aralkylamine dehydrogenase light chain
Domain ID domain_id1mg2G00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily420 — Cupredoxins - blue copper proteins
Domain ID domain_id1mg2H00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology760 — Cytochrome Bc1 Complex; Chain D, domain 2
Homologous superfamily homologous superfamily10 — Cytochrome c-like domain
Domain ID domain_id1mg2I00
Class class2 — Mainly Beta
Architecture architecture130 — 7 Propeller
Topology topology10 — Methylamine Dehydrogenase; Chain H
Homologous superfamily homologous superfamily10 — YVTN repeat-like/Quinoprotein amine dehydrogenase
Domain ID domain_id1mg2J00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology30 — Electron Transport Ethylamine Dehydrogenase
Homologous superfamily homologous superfamily10 — Methylamine/Aralkylamine dehydrogenase light chain
Domain ID domain_id1mg2K00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily420 — Cupredoxins - blue copper proteins
Domain ID domain_id1mg2L00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology760 — Cytochrome Bc1 Complex; Chain D, domain 2
Homologous superfamily homologous superfamily10 — Cytochrome c-like domain
Domain ID domain_id1mg2M00
Class class2 — Mainly Beta
Architecture architecture130 — 7 Propeller
Topology topology10 — Methylamine Dehydrogenase; Chain H
Homologous superfamily homologous superfamily10 — YVTN repeat-like/Quinoprotein amine dehydrogenase
Domain ID domain_id1mg2N00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology30 — Electron Transport Ethylamine Dehydrogenase
Homologous superfamily homologous superfamily10 — Methylamine/Aralkylamine dehydrogenase light chain
Domain ID domain_id1mg2O00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily420 — Cupredoxins - blue copper proteins
Domain ID domain_id1mg2P00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology760 — Cytochrome Bc1 Complex; Chain D, domain 2
Homologous superfamily homologous superfamily10 — Cytochrome c-like domain
▶

7. Citations (2)