1o2f

COMPLEX OF ENZYME IIAGLC AND IIBGLC PHOSPHOCARRIER PROTEIN HPR FROM ESCHERICHIA COLI NMR, RESTRAINED REGULARIZED MEAN STRUCTURE

Method: SOLUTION NMR Dmax: 59.1 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

PTS system, glucose-specific IIA component

Escherichia coli

UniProt P69783

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 1–168 Not recorded PTS system, glucose-specific IIBC component × 1 (P69786) PO3 PHOSPHITE ION × 1 SOLUTION NMR NMR measurement conditions:pH 7;308 K;Ionic strength (raw mmCIF value) 10 mM SODIUM PHOSPHATE Resolution not provided

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

11 other PDB entries and 16 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name PTGA_ECOLI
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–168; UniProt 1–168

PTS system, glucose-specific IIBC component

Escherichia coli

UniProt P69786

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain B; UniProt 387–476 Not recorded PTS system, glucose-specific IIA component × 1 (P69783) PO3 PHOSPHITE ION × 1 SOLUTION NMR NMR measurement conditions:pH 7;308 K;Ionic strength (raw mmCIF value) 10 mM SODIUM PHOSPHATE Resolution not provided

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

6 other PDB entries and 9 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name PTGCB_ECOLI
Isoform
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–90; UniProt 387–476

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 1o2f

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 1o2f
Download Download

2. Structure Basics 2. Structure Basics

Entry ID entry_id1o2f
Deposition date deposition_date2003-03-11
Structure title titleCOMPLEX OF ENZYME IIAGLC AND IIBGLC PHOSPHOCARRIER PROTEIN HPR FROM ESCHERICHIA COLI NMR, RESTRAINED REGULARIZED MEAN STRUCTURE
Keywords keywordsPHOSPHOTRANSFERASE, TRANSFERASE, KINASE, SUGAR TRANSPORT, COMPLEX (TRANSFERASE-PHOSPHOCARRIER); TRANSFERASE
Experimental Method methodSOLUTION NMR

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier18.48
Radius of gyration Rg (electron density) rg_electron18.04
Forward intensity I(0) i073832200.00
Molecular weight molecular_weight72451.0 kDa
Excluded volume excluded_volume91804 ų
Envelope volume envelope_volume35489 ų
Hydration-shell volume shell_volume16826 ų
Envelope diameter envelope_diameter61.3
Shell Rg shell_rg23.85
Envelope Rg envelope_rg18.34
Shape Rg shape_rg18.02
Total Rg total_rg18.45
Total atoms total_atoms10313
Residues n_residues681
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax59.1
Rg (real space) rg_real18.45
Rg uncertainty (real space) rg_real_error0.32
I(0) (real space) i0_real7.3830e+07
I(0) uncertainty (real space) i0_real_error7.9900e+05
Rg (reciprocal space) rg_reciprocal18.45
I(0) (reciprocal space) i0_reciprocal73830000.0000
Solution quality estimate total_estimate0.8099
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary22.7
Skewness Skewness skewness0.300
Kurtosis Kurtosis kurtosis-0.395
Angular range angular_range— – 0.4300 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha2082000.0000
Real-space data points n_real_points74
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.844; Stabil: 0.998; Sysdev: 1.000; Positv: 1.000; Valcen: 0.998; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

7. Fold Classification (SCOP + CATH) 4 domains

SCOP 2.08 (2 domains)

Domain ID domain_idd1o2fa_
Class classb — All beta proteins
Fold Fold foldb.84 — Barrel-sandwich hybrid
Superfamily Superfamily superfamilyb.84.3 — Duplicated hybrid motif
Family Family familyb.84.3.1 — Glucose permease-like
Domain ID domain_idd1o2fb_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.95 — Homing endonuclease-like
Superfamily Superfamily superfamilyd.95.1 — Glucose permease domain IIB
Family Family familyd.95.1.1 — Glucose permease domain IIB

CATH v4.4 (2 domains)

Domain ID domain_id1o2fA00
Class class2 — Mainly Beta
Architecture architecture70 — Distorted Sandwich
Topology topology70 — Glucose Permease (Domain IIA)
Homologous superfamily homologous superfamily10 — Glucose Permease (Domain IIA)
Domain ID domain_id1o2fB00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1360 — Gyrase A; domain 2
Homologous superfamily homologous superfamily60 — Glucose permease domain IIB

8. Citations (1)

9. Files and Curves (10)