2mp0

Protein Phosphorylation upon a Fleeting Encounter

Method: SOLUTION NMR Dmax: 83.4 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Phosphoenolpyruvate-protein phosphotransferase

Escherichia coli

UniProt P08839

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 1–258 Fragment:N-terminal Domain, residues 1-258 Glucose-specific phosphotransferase enzyme IIA component × 1 (P69783) PO3 PHOSPHITE ION × 1 SOLUTION NMR NMR measurement conditions:pH 7.4;313.4 K NMR sample composition:0.5 mM [U-99% 15N] N-terminal Domain of Enzyme I-1, 0.5 mM [U-99% 15N] Enzyme II of Glucose-2, 90% H2O/10% D2O | 90% H2O/10% D2O NMR sample composition:1-14 mM [U-100% 1H; U-100% 12C; U-99%1 5N] N-terminal Domain of Enzyme I-3, 1-14 mM [U-99% 15N] EIN EIIAGlc-4, 1-14 mM EIN-5, 90% H2O/10% D2O | 90% H2O/10% D2O NMR sample composition:1.4-1.5 mM [U-100% 2H; U-100% 12C; U-99% 15N] N-terminal Domain of Enzyme I-6, 90% H2O/10% D2O | 90% H2O/10% D2O Resolution not provided

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

16 other PDB entries and 16 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name PT1_ECOLI
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–258; UniProt 1–258

Glucose-specific phosphotransferase enzyme IIA component

Escherichia coli

UniProt P69783

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain B; UniProt 2–169 Not recorded Phosphoenolpyruvate-protein phosphotransferase × 1 (P08839) PO3 PHOSPHITE ION × 1 SOLUTION NMR NMR measurement conditions:pH 7.4;313.4 K NMR sample composition:0.5 mM [U-99% 15N] N-terminal Domain of Enzyme I-1, 0.5 mM [U-99% 15N] Enzyme II of Glucose-2, 90% H2O/10% D2O | 90% H2O/10% D2O NMR sample composition:1-14 mM [U-100% 1H; U-100% 12C; U-99%1 5N] N-terminal Domain of Enzyme I-3, 1-14 mM [U-99% 15N] EIN EIIAGlc-4, 1-14 mM EIN-5, 90% H2O/10% D2O | 90% H2O/10% D2O NMR sample composition:1.4-1.5 mM [U-100% 2H; U-100% 12C; U-99% 15N] N-terminal Domain of Enzyme I-6, 90% H2O/10% D2O | 90% H2O/10% D2O Resolution not provided

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

11 other PDB entries and 16 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name PTGA_ECOLI
Isoform
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–168; UniProt 2–169

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 2mp0

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 2mp0
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2. Structure Basics 2. Structure Basics

Entry ID entry_id2mp0
Deposition date deposition_date2014-05-08
Structure title titleProtein Phosphorylation upon a Fleeting Encounter
Keywords keywordsEIN EIIAGlc complex, Transferase; TRANSFERASE
Experimental Method methodSOLUTION NMR

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier24.99
Radius of gyration Rg (electron density) rg_electron24.08
Forward intensity I(0) i031139600.00
Molecular weight molecular_weight43251.0 kDa
Excluded volume excluded_volume54569 ų
Envelope volume envelope_volume69937 ų
Hydration-shell volume shell_volume25054 ų
Envelope diameter envelope_diameter82.8
Shell Rg shell_rg30.25
Envelope Rg envelope_rg24.20
Shape Rg shape_rg24.05
Total Rg total_rg24.96
Total atoms total_atoms6156
Residues n_residues398
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax83.4
Rg (real space) rg_real24.95
Rg uncertainty (real space) rg_real_error0.47
I(0) (real space) i0_real3.1140e+07
I(0) uncertainty (real space) i0_real_error4.3320e+05
Rg (reciprocal space) rg_reciprocal24.97
I(0) (reciprocal space) i0_reciprocal31140000.0000
Solution quality estimate total_estimate0.8905
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary26.5
Skewness Skewness skewness0.258
Kurtosis Kurtosis kurtosis-0.516
Angular range angular_range— – 0.3200 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha8892000.0000
Real-space data points n_real_points64
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.871; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.962; Smooth: 0.996

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

7. Fold Classification (SCOP + CATH) 4 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd2mp0b_
Class classb — All beta proteins
Fold Fold foldb.84 — Barrel-sandwich hybrid
Superfamily Superfamily superfamilyb.84.3 — Duplicated hybrid motif
Family Family familyb.84.3.1 — Glucose permease-like

CATH v4.4 (3 domains)

Domain ID domain_id2mp0A01
Class class3 — Alpha Beta
Architecture architecture50 — 3-Layer(bba) Sandwich
Topology topology30 — Glucose Oxidase; domain 1
Homologous superfamily homologous superfamily10 — Phosphohistidine domain
Domain ID domain_id2mp0A02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology274 — Enzyme I; Chain A, domain 2
Homologous superfamily homologous superfamily10 — PtsI, HPr-binding domain
Domain ID domain_id2mp0B00
Class class2 — Mainly Beta
Architecture architecture70 — Distorted Sandwich
Topology topology70 — Glucose Permease (Domain IIA)
Homologous superfamily homologous superfamily10 — Glucose Permease (Domain IIA)

8. Citations (2)

9. Files and Curves (10)