1ggr

COMPLEX OF ENZYME IIAGLC AND THE HISTIDINE-CONTAINING PHOSPHOCARRIER PROTEIN HPR FROM ESCHERICHIA COLI NMR, RESTRAINED REGULARIZED MEAN STRUCTURE

Method: SOLUTION NMR Dmax: 55.9 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

PTS SYSTEM, GLUCOSE-SPECIFIC IIA COMPONENT

Escherichia coli

UniProt P69783

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 1–168 Not recorded PHOSPHOCARRIER PROTEIN HPR × 1 (P0AA04) PO3 PHOSPHITE ION × 1 SOLUTION NMR NMR measurement conditions:pH 7.1;308 K;Ionic strength (raw mmCIF value) 10 mM SODIUM PHOSPHATE Resolution not provided

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

11 other PDB entries and 16 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name PTGA_ECOLI
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–168; UniProt 1–168

PHOSPHOCARRIER PROTEIN HPR

Escherichia coli

UniProt P0AA04

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain B; UniProt 1–85 Not recorded PTS SYSTEM, GLUCOSE-SPECIFIC IIA COMPONENT × 1 (P69783) PO3 PHOSPHITE ION × 1 SOLUTION NMR NMR measurement conditions:pH 7.1;308 K;Ionic strength (raw mmCIF value) 10 mM SODIUM PHOSPHATE Resolution not provided

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

22 other PDB entries and 28 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name PTHP_ECOLI
Isoform
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–85; UniProt 1–85

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 1ggr

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 1ggr
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2. Structure Basics 2. Structure Basics

Entry ID entry_id1ggr
Deposition date deposition_date2000-09-18
Structure title titleCOMPLEX OF ENZYME IIAGLC AND THE HISTIDINE-CONTAINING PHOSPHOCARRIER PROTEIN HPR FROM ESCHERICHIA COLI NMR, RESTRAINED REGULARIZED MEAN STRUCTURE
Keywords keywordsPHOSPHOTRANSFERASE, TRANSFERASE, KINASE, SUGAR TRANSPORT, COMPLEX (TRANSFERASE-PHOSPHOCARRIER); TRANSFERASE
Experimental Method methodSOLUTION NMR

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier18.49
Radius of gyration Rg (electron density) rg_electron17.85
Forward intensity I(0) i080028000.00
Molecular weight molecular_weight75876.0 kDa
Excluded volume excluded_volume96244 ų
Envelope volume envelope_volume37988 ų
Hydration-shell volume shell_volume17791 ų
Envelope diameter envelope_diameter82.1
Shell Rg shell_rg23.98
Envelope Rg envelope_rg18.91
Shape Rg shape_rg17.82
Total Rg total_rg18.35
Total atoms total_atoms10785
Residues n_residues705
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax55.9
Rg (real space) rg_real18.47
Rg uncertainty (real space) rg_real_error0.09
I(0) (real space) i0_real7.7940e+07
I(0) uncertainty (real space) i0_real_error6.9970e+05
Rg (reciprocal space) rg_reciprocal18.49
I(0) (reciprocal space) i0_reciprocal80030000.0000
Solution quality estimate total_estimate0.7007
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary22.2
Skewness Skewness skewness0.290
Kurtosis Kurtosis kurtosis-0.358
Angular range angular_range— – 0.4300 −1
Current regularization parameter α current_alpha9.3110
Highest regularization parameter α highest_alpha1928000.0000
Real-space data points n_real_points74
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.001; Oscil: 0.953; Stabil: 0.929; Sysdev: 0.000; Positv: 1.000; Valcen: 0.999; Smooth: 0.484

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

7. Fold Classification (SCOP + CATH) 4 domains

SCOP 2.08 (2 domains)

Domain ID domain_idd1ggra_
Class classb — All beta proteins
Fold Fold foldb.84 — Barrel-sandwich hybrid
Superfamily Superfamily superfamilyb.84.3 — Duplicated hybrid motif
Family Family familyb.84.3.1 — Glucose permease-like
Domain ID domain_idd1ggrb_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.94 — HPr-like
Superfamily Superfamily superfamilyd.94.1 — HPr-like
Family Family familyd.94.1.1 — HPr-like

CATH v4.4 (2 domains)

Domain ID domain_id1ggrA00
Class class2 — Mainly Beta
Architecture architecture70 — Distorted Sandwich
Topology topology70 — Glucose Permease (Domain IIA)
Homologous superfamily homologous superfamily10 — Glucose Permease (Domain IIA)
Domain ID domain_id1ggrB00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1340 — Histidine-containing Protein; Chain: A;
Homologous superfamily homologous superfamily10 — HPr-like

8. Citations (1)

9. Files and Curves (10)