1qz2
Crystal Structure of FKBP52 C-terminal Domain complex with the C-terminal peptide MEEVD of Hsp90
SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 1qz2 |
| 沉积日期 deposition_date | 2003-09-15 |
| 结构标题 title | Crystal Structure of FKBP52 C-terminal Domain complex with the C-terminal peptide MEEVD of Hsp90 |
| 关键词 keywords | Isomerase, Rotamase, chaperone, Heat shock, ISOMERASE-CHAPERONE COMPLEX; ISOMERASE/CHAPERONE |
| 实验方法 method | X-RAY DIFFRACTION |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
| 回转半径 Rg (Guinier) rg_guinier | 37.84 Å |
| 回转半径 Rg (电子) rg_electron | 37.00 Å |
| 零角强度 I(0) i0 | 156718000.00 |
| 分子量 molecular_weight | 99428.0 kDa |
| 排除体积 excluded_volume | 124240 ų |
| 包络体积 envelope_volume | 194650 ų |
| 水化壳体积 shell_volume | 44069 ų |
| 包络直径 envelope_diameter | 110.8 Å |
| 壳层 Rg shell_rg | 43.99 Å |
| 包络 Rg envelope_rg | 34.65 Å |
| 形状 Rg shape_rg | 36.99 Å |
| 总 Rg total_rg | 37.58 Å |
| 总原子数 total_atoms | 7004 |
| 残基数 n_residues | 865 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
| 最大尺寸 Dmax dmax | 110.8 Å |
| Rg (实空间) rg_real | 37.60 Å |
| Rg 误差 (实空间) rg_real_error | 0.53 Å |
| I(0) (实空间) i0_real | 1.5670e+08 |
| I(0) 误差 (实空间) i0_real_error | 2.1390e+06 |
| Rg (倒空间) rg_reciprocal | 37.76 Å |
| I(0) (倒空间) i0_reciprocal | 156700000.0000 |
| 解质量估计 total_estimate | 0.9074 |
| 解质量评级 solution_quality | EXCELLENT a EXCELLENT solution |
| P(r) 峰数 n_peaks | 1 |
| 主峰位置 r_peak_primary | 60.7 Å |
| 偏度 Skewness skewness | -0.077 |
| 峰度 Kurtosis kurtosis | -0.870 |
| 角度范围 angular_range | — – 0.2100 Å−1 |
| 当前正则化参数 α current_alpha | 0.0001 |
| 最高正则化参数 α highest_alpha | 9649000.0000 |
| 实空间数据点数 n_real_points | 43 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria | AN1: 0.000; Oscil: 0.955; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.998; Smooth: 0.929 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (3)
6. 折叠分类 (SCOP + CATH) 15 domains
SCOP 2.08 (9 domains)
| 结构域编号 domain_id | d1qz2a1 |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.118 — alpha-alpha superhelix |
| 超家族 Superfamily superfamily | a.118.8 — TPR-like |
| 家族 Family family | a.118.8.1 — Tetratricopeptide repeat (TPR) |
| 结构域编号 domain_id | d1qz2a2 |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.26 — FKBP-like |
| 超家族 Superfamily superfamily | d.26.1 — FKBP-like |
| 家族 Family family | d.26.1.1 — FKBP immunophilin/proline isomerase |
| 结构域编号 domain_id | d1qz2a3 |
| 类 Class class | l — Artifacts |
| 折叠类型 Fold fold | l.1 — Tags |
| 超家族 Superfamily superfamily | l.1.1 — Tags |
| 家族 Family family | l.1.1.1 — Tags |
| 结构域编号 domain_id | d1qz2b1 |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.118 — alpha-alpha superhelix |
| 超家族 Superfamily superfamily | a.118.8 — TPR-like |
| 家族 Family family | a.118.8.1 — Tetratricopeptide repeat (TPR) |
| 结构域编号 domain_id | d1qz2b2 |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.26 — FKBP-like |
| 超家族 Superfamily superfamily | d.26.1 — FKBP-like |
| 家族 Family family | d.26.1.1 — FKBP immunophilin/proline isomerase |
| 结构域编号 domain_id | d1qz2b3 |
| 类 Class class | l — Artifacts |
| 折叠类型 Fold fold | l.1 — Tags |
| 超家族 Superfamily superfamily | l.1.1 — Tags |
| 家族 Family family | l.1.1.1 — Tags |
| 结构域编号 domain_id | d1qz2c1 |
| 类 Class class | a — All alpha proteins |
| 折叠类型 Fold fold | a.118 — alpha-alpha superhelix |
| 超家族 Superfamily superfamily | a.118.8 — TPR-like |
| 家族 Family family | a.118.8.1 — Tetratricopeptide repeat (TPR) |
| 结构域编号 domain_id | d1qz2c2 |
| 类 Class class | d — Alpha and beta proteins (a+b) |
| 折叠类型 Fold fold | d.26 — FKBP-like |
| 超家族 Superfamily superfamily | d.26.1 — FKBP-like |
| 家族 Family family | d.26.1.1 — FKBP immunophilin/proline isomerase |
| 结构域编号 domain_id | d1qz2c3 |
| 类 Class class | l — Artifacts |
| 折叠类型 Fold fold | l.1 — Tags |
| 超家族 Superfamily superfamily | l.1.1 — Tags |
| 家族 Family family | l.1.1.1 — Tags |
CATH v4.4 (6 domains)
| 结构域编号 domain_id | 1qz2A01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 10 — Roll |
| 拓扑 Topology topology | 50 — Chitinase A; domain 3 |
| 同源超家族 H-superfamily homologous superfamily | 40 — |
| 结构域编号 domain_id | 1qz2A02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 25 — Alpha Horseshoe |
| 拓扑 Topology topology | 40 — Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat |
| 同源超家族 H-superfamily homologous superfamily | 10 — Tetratricopeptide repeat domain |
| 结构域编号 domain_id | 1qz2B01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 10 — Roll |
| 拓扑 Topology topology | 50 — Chitinase A; domain 3 |
| 同源超家族 H-superfamily homologous superfamily | 40 — |
| 结构域编号 domain_id | 1qz2B02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 25 — Alpha Horseshoe |
| 拓扑 Topology topology | 40 — Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat |
| 同源超家族 H-superfamily homologous superfamily | 10 — Tetratricopeptide repeat domain |
| 结构域编号 domain_id | 1qz2C01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 10 — Roll |
| 拓扑 Topology topology | 50 — Chitinase A; domain 3 |
| 同源超家族 H-superfamily homologous superfamily | 40 — |
| 结构域编号 domain_id | 1qz2C02 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 25 — Alpha Horseshoe |
| 拓扑 Topology topology | 40 — Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat |
| 同源超家族 H-superfamily homologous superfamily | 10 — Tetratricopeptide repeat domain |