1rbo

SPINACH RUBISCO IN COMPLEX WITH THE INHIBITOR 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE

Method: X-RAY DIFFRACTION
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1. 蛋白身份与相关结构 Protein Identity & Related Structures

RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE

物种未注明

UniProt P00875

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 16 RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE × 8 (P00870) 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE × 8 water × 16 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 RBL_SPIOL
Isoform —
PDB实体 1
链与序列区间 作者链 B; PDB构建体 1–475; UniProt 1–475 作者链 E; PDB构建体 1–475; UniProt 1–475 作者链 H; PDB构建体 1–475; UniProt 1–475 作者链 L; PDB构建体 1–475; UniProt 1–475

RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE

物种未注明

UniProt P00870

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 16 RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE × 8 (P00875) 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE × 8 water × 16 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 RBS1_SPIOL
Isoform —
PDB实体 2
链与序列区间 作者链 C; PDB构建体 1–123; UniProt 58–180 作者链 F; PDB构建体 1–123; UniProt 58–180 作者链 I; PDB构建体 1–123; UniProt 58–180 作者链 S; PDB构建体 1–123; UniProt 58–180

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id1rbo
沉积日期 deposition_date1996-10-31
结构标题 titleSPINACH RUBISCO IN COMPLEX WITH THE INHIBITOR 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
关键词 keywordsLYASE, CARBON-CARBON; LYASE
实验方法 methodX-RAY DIFFRACTION
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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

1rbo__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

1rbo__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

1rbo__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)47.15 Å
Rg(电子密度)46.45 Å
总 Rg46.81 Å
原子数37624
残基数4720
排除体积666730 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 1rbo__assembly_1__model_1 hexadecameric (16) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (4)

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6. 折叠分类 (SCOP + CATH) 24 domains

SCOP 2.08 (12 domains)

结构域编号 domain_idd1rbob1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.1 — TIM beta/alpha-barrel
超家族 Superfamily superfamilyc.1.14 — RuBisCo, C-terminal domain
家族 Family familyc.1.14.1 — RuBisCo, large subunit, C-terminal domain
结构域编号 domain_idd1rbob2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.58 — Ferredoxin-like
超家族 Superfamily superfamilyd.58.9 — RuBisCO, large subunit, small (N-terminal) domain
家族 Family familyd.58.9.1 — Ribulose 1,5-bisphosphate carboxylase-oxygenase
结构域编号 domain_idd1rboc_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.73 — RuBisCO, small subunit
超家族 Superfamily superfamilyd.73.1 — RuBisCO, small subunit
家族 Family familyd.73.1.1 — RuBisCO, small subunit
结构域编号 domain_idd1rboe1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.1 — TIM beta/alpha-barrel
超家族 Superfamily superfamilyc.1.14 — RuBisCo, C-terminal domain
家族 Family familyc.1.14.1 — RuBisCo, large subunit, C-terminal domain
结构域编号 domain_idd1rboe2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.58 — Ferredoxin-like
超家族 Superfamily superfamilyd.58.9 — RuBisCO, large subunit, small (N-terminal) domain
家族 Family familyd.58.9.1 — Ribulose 1,5-bisphosphate carboxylase-oxygenase
结构域编号 domain_idd1rbof_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.73 — RuBisCO, small subunit
超家族 Superfamily superfamilyd.73.1 — RuBisCO, small subunit
家族 Family familyd.73.1.1 — RuBisCO, small subunit
结构域编号 domain_idd1rboh1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.1 — TIM beta/alpha-barrel
超家族 Superfamily superfamilyc.1.14 — RuBisCo, C-terminal domain
家族 Family familyc.1.14.1 — RuBisCo, large subunit, C-terminal domain
结构域编号 domain_idd1rboh2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.58 — Ferredoxin-like
超家族 Superfamily superfamilyd.58.9 — RuBisCO, large subunit, small (N-terminal) domain
家族 Family familyd.58.9.1 — Ribulose 1,5-bisphosphate carboxylase-oxygenase
结构域编号 domain_idd1rboi_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.73 — RuBisCO, small subunit
超家族 Superfamily superfamilyd.73.1 — RuBisCO, small subunit
家族 Family familyd.73.1.1 — RuBisCO, small subunit
结构域编号 domain_idd1rbol1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.1 — TIM beta/alpha-barrel
超家族 Superfamily superfamilyc.1.14 — RuBisCo, C-terminal domain
家族 Family familyc.1.14.1 — RuBisCo, large subunit, C-terminal domain
结构域编号 domain_idd1rbol2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.58 — Ferredoxin-like
超家族 Superfamily superfamilyd.58.9 — RuBisCO, large subunit, small (N-terminal) domain
家族 Family familyd.58.9.1 — Ribulose 1,5-bisphosphate carboxylase-oxygenase
结构域编号 domain_idd1rbos_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.73 — RuBisCO, small subunit
超家族 Superfamily superfamilyd.73.1 — RuBisCO, small subunit
家族 Family familyd.73.1.1 — RuBisCO, small subunit

CATH v4.4 (12 domains)

结构域编号 domain_id1rboB01
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily150 — RuBisCO large subunit, N-terminal domain
结构域编号 domain_id1rboB02
类 Class class3 — Alpha Beta
架构 Architecture architecture20 — Alpha-Beta Barrel
拓扑 Topology topology20 — TIM Barrel
同源超家族 H-superfamily homologous superfamily110 — Ribulose bisphosphate carboxylase, large subunit, C-terminal domain
结构域编号 domain_id1rboC00
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology190 — Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase
同源超家族 H-superfamily homologous superfamily10 — Ribulose bisphosphate carboxylase, small subunit
结构域编号 domain_id1rboE01
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily150 — RuBisCO large subunit, N-terminal domain
结构域编号 domain_id1rboE02
类 Class class3 — Alpha Beta
架构 Architecture architecture20 — Alpha-Beta Barrel
拓扑 Topology topology20 — TIM Barrel
同源超家族 H-superfamily homologous superfamily110 — Ribulose bisphosphate carboxylase, large subunit, C-terminal domain
结构域编号 domain_id1rboF00
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology190 — Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase
同源超家族 H-superfamily homologous superfamily10 — Ribulose bisphosphate carboxylase, small subunit
结构域编号 domain_id1rboH01
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily150 — RuBisCO large subunit, N-terminal domain
结构域编号 domain_id1rboH02
类 Class class3 — Alpha Beta
架构 Architecture architecture20 — Alpha-Beta Barrel
拓扑 Topology topology20 — TIM Barrel
同源超家族 H-superfamily homologous superfamily110 — Ribulose bisphosphate carboxylase, large subunit, C-terminal domain
结构域编号 domain_id1rboI00
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology190 — Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase
同源超家族 H-superfamily homologous superfamily10 — Ribulose bisphosphate carboxylase, small subunit
结构域编号 domain_id1rboL01
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily150 — RuBisCO large subunit, N-terminal domain
结构域编号 domain_id1rboL02
类 Class class3 — Alpha Beta
架构 Architecture architecture20 — Alpha-Beta Barrel
拓扑 Topology topology20 — TIM Barrel
同源超家族 H-superfamily homologous superfamily110 — Ribulose bisphosphate carboxylase, large subunit, C-terminal domain
结构域编号 domain_id1rboS00
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology190 — Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase
同源超家族 H-superfamily homologous superfamily10 — Ribulose bisphosphate carboxylase, small subunit
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7. 引用文献 (2)