2j12

Ad37 fibre head in complex with CAR D1

Method: X-RAY DIFFRACTION Dmax: 78.2 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

FIBER PROTEIN

Human adenovirus D37

UniProt Q64823

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 6 PDB declaration: hexameric(6) Consistent with protein copy count Chain A; UniProt 177–365 Fragment:FIBRE HEAD, RESIDUES 177-365 COXSACKIEVIRUS AND ADENOVIRUS RECEPTOR × 3 (P78310) CA CALCIUM ION × 3 X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions Resolution 1.50 Å R-free 0.169

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

13 other PDB entries and 16 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name Q64823_ADEN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 6–194; UniProt 177–365

COXSACKIEVIRUS AND ADENOVIRUS RECEPTOR

HOMO SAPIENS

UniProt P78310

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 6 PDB declaration: hexameric(6) Consistent with protein copy count Chain B; UniProt 15–140 Fragment:DOMAIN D1, RESIDUES 15-140 FIBER PROTEIN × 3 (Q64823) CA CALCIUM ION × 3 X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions Resolution 1.50 Å R-free 0.169

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

20 other PDB entries and 67 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name CXAR_HUMAN
Isoform
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 3–128; UniProt 15–140

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 2j12

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 2j12
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2. Structure Basics 2. Structure Basics

Entry ID entry_id2j12
Deposition date deposition_date2006-08-08
Structure title titleAd37 fibre head in complex with CAR D1
Keywords keywords;VIRAL PROTEIN-RECEPTOR COMPLEX, CAR, AD37, HAD37, COMPLEX, MEMBRANE, RECEPTOR, COXSACKIEVIRUS, PHOSPHORYLATION, IMMUNOGLOBULIN DOMAIN, HOST-VIRUS INTERACTION, CELL ADHESION, TRANSMEMBRANE, TIGHT JUNCTION, PALMITATE, ADENOVIRUS, LIPOPROTEIN, GLYCOPROTEIN ;; VIRAL PROTEIN/RECEPTOR
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier21.62
Radius of gyration Rg (electron density) rg_electron20.70
Forward intensity I(0) i018609000.00
Molecular weight molecular_weight33710.0 kDa
Excluded volume excluded_volume42655 ų
Envelope volume envelope_volume49763 ų
Hydration-shell volume shell_volume20410 ų
Envelope diameter envelope_diameter76.0
Shell Rg shell_rg26.92
Envelope Rg envelope_rg20.96
Shape Rg shape_rg20.66
Total Rg total_rg21.70
Total atoms total_atoms2376
Residues n_residues302
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax78.2
Rg (real space) rg_real21.59
Rg uncertainty (real space) rg_real_error0.51
I(0) (real space) i0_real1.8610e+07
I(0) uncertainty (real space) i0_real_error2.2920e+05
Rg (reciprocal space) rg_reciprocal21.60
I(0) (reciprocal space) i0_reciprocal18610000.0000
Solution quality estimate total_estimate0.7713
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary24.1
Skewness Skewness skewness0.336
Kurtosis Kurtosis kurtosis-0.242
Angular range angular_range— – 0.3700 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha4179000.0000
Real-space data points n_real_points69
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.703; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.913; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (4)

7. Fold Classification (SCOP + CATH) 4 domains

SCOP 2.08 (2 domains)

Domain ID domain_idd2j12a_
Class classb — All beta proteins
Fold Fold foldb.21 — Virus attachment protein globular domain
Superfamily Superfamily superfamilyb.21.1 — Virus attachment protein globular domain
Family Family familyb.21.1.1 — Adenovirus fiber protein 'knob' domain
Domain ID domain_idd2j12b_
Class classb — All beta proteins
Fold Fold foldb.1 — Immunoglobulin-like beta-sandwich
Superfamily Superfamily superfamilyb.1.1 — Immunoglobulin
Family Family familyb.1.1.1 — V set domains (antibody variable domain-like)

CATH v4.4 (2 domains)

Domain ID domain_id2j12A00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology90 — Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)
Homologous superfamily homologous superfamily10 — Adenovirus pIV-related, attachment domain
Domain ID domain_id2j12B00
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins

8. Citations (1)

9. Files and Curves (10)