2mv6

Solution structure of the transmembrane domain and the juxta-membrane domain of the Erythropoietin Receptor in micelles

Method: SOLUTION NMR Dmax: 80.3 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

Erythropoietin receptor

Homo sapiens

UniProt P19235

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 237–284 Fragment:UNP residues 237-284 No other associated polymer SOLUTION NMR NMR measurement conditions:pH 6.5;313 K;Ionic strength (raw mmCIF value) 20;Pressure ambient NMR sample composition:20 mM sodium phosphate, 10 v/v D2O, 250 mM DPC, 0.5 mM [U-99% 15N] protein, 90% H2O/10% D2O | 90% H2O/10% D2O NMR sample composition:0.5-1 mM [U-100% 13C; U-100% 15N] protein, 10 % D2O, 20 mM sodium phosphate, 200-400 mM DPC, 1 mM DTT, 90% H2O/10% D2O | 90% H2O/10% D2O Resolution not provided

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

20 other PDB entries and 30 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name EPOR_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 2–49; UniProt 237–284

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 2mv6

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 2mv6
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2. Structure Basics 2. Structure Basics

Entry ID entry_id2mv6
Deposition date deposition_date2014-09-23
Structure title titleSolution structure of the transmembrane domain and the juxta-membrane domain of the Erythropoietin Receptor in micelles
Keywords keywordsMicelles, Transmembrane domain, Erythropoietin receptor, MEMBRANE PROTEIN; MEMBRANE PROTEIN
Experimental Method methodSOLUTION NMR

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier20.80
Radius of gyration Rg (electron density) rg_electron20.33
Forward intensity I(0) i0114434000.00
Molecular weight molecular_weight108900.0 kDa
Excluded volume excluded_volume144960 ų
Envelope volume envelope_volume31606 ų
Hydration-shell volume shell_volume12115 ų
Envelope diameter envelope_diameter84.8
Shell Rg shell_rg28.68
Envelope Rg envelope_rg24.84
Shape Rg shape_rg20.35
Total Rg total_rg20.54
Total atoms total_atoms16460
Residues n_residues980
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax80.3
Rg (real space) rg_real21.29
Rg uncertainty (real space) rg_real_error1.25
I(0) (real space) i0_real1.1440e+08
I(0) uncertainty (real space) i0_real_error1.7250e+06
Rg (reciprocal space) rg_reciprocal21.20
I(0) (reciprocal space) i0_reciprocal114400000.0000
Solution quality estimate total_estimate0.6155
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks5
Primary peak position r_peak_primary4.7
Skewness Skewness skewness0.379
Kurtosis Kurtosis kurtosis-0.898
Angular range angular_range— – 0.3800 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha13550.0000
Real-space data points n_real_points70
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.000; Stabil: 0.995; Sysdev: 1.000; Positv: 1.000; Valcen: 0.019; Smooth: 0.995

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (1)

8. Citations (1)

9. Files and Curves (10)