2v6a

Crystal structure of Chlamydomonas reinhardtii Rubisco with large- subunit mutations V331A, G344S

Method: X-RAY DIFFRACTION
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1. 蛋白身份与相关结构 Protein Identity & Related Structures

RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN

CHLAMYDOMONAS REINHARDTII

UniProt P00877

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 16 RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1 × 8 (P00873) MAGNESIUM ION × 8 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE × 8 1,2-ETHANEDIOL × 59 water × 16 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 RBL_CHLRE
Isoform —
PDB实体 1
链与序列区间 作者链 A; PDB构建体 1–475; UniProt 1–475 作者链 B; PDB构建体 1–475; UniProt 1–475 作者链 C; PDB构建体 1–475; UniProt 1–475 作者链 D; PDB构建体 1–475; UniProt 1–475 作者链 E; PDB构建体 1–475; UniProt 1–475 作者链 F; PDB构建体 1–475; UniProt 1–475 作者链 G; PDB构建体 1–475; UniProt 1–475 作者链 H; PDB构建体 1–475; UniProt 1–475

RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1

CHLAMYDOMONAS REINHARDTII

UniProt P00873

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白异源复合物 异源复合物 蛋白 16 RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN × 8 (P00877) MAGNESIUM ION × 8 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE × 8 1,2-ETHANEDIOL × 59 water × 16 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 RBS1_CHLRE
Isoform —
PDB实体 2
链与序列区间 作者链 I; PDB构建体 1–140; UniProt 46–185 作者链 J; PDB构建体 1–140; UniProt 46–185 作者链 K; PDB构建体 1–140; UniProt 46–185 作者链 L; PDB构建体 1–140; UniProt 46–185 作者链 M; PDB构建体 1–140; UniProt 46–185 作者链 N; PDB构建体 1–140; UniProt 46–185 作者链 O; PDB构建体 1–140; UniProt 46–185 作者链 P; PDB构建体 1–140; UniProt 46–185

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id2v6a
沉积日期 deposition_date2007-07-14
结构标题 titleCrystal structure of Chlamydomonas reinhardtii Rubisco with large- subunit mutations V331A, G344S
关键词 keywords;LARGE SUBUNIT LOOP 6 MUTATION, CO2/O2 SPECIFICITY, CARBON DIOXIDE FIXATION, PHOTOSYNTHESIS, TRANSIT PEPTIDE, PHOTORESPIRATION, METAL-BINDING, HYDROXYLATION, OXIDOREDUCTASE, METHYLATION, CHLOROPLAST, CALVIN CYCLE, MONOOXYGENASE, LYASE, RUBISCO, PLASTID, MAGNESIUM, ACETYLATION ;; OXIDOREDUCTASE
实验方法 methodX-RAY DIFFRACTION
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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

2v6a__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

2v6a__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

2v6a__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)47.06 Å
Rg(电子密度)46.24 Å
总 Rg46.58 Å
原子数38619
残基数4801
排除体积685890 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 2v6a__assembly_1__model_1 hexadecameric (16) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (6)

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6. 折叠分类 (SCOP + CATH) 48 domains

SCOP 2.08 (24 domains)

结构域编号 domain_idd2v6aa1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.1 — TIM beta/alpha-barrel
超家族 Superfamily superfamilyc.1.14 — RuBisCo, C-terminal domain
家族 Family familyc.1.14.1 — RuBisCo, large subunit, C-terminal domain
结构域编号 domain_idd2v6aa2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.58 — Ferredoxin-like
超家族 Superfamily superfamilyd.58.9 — RuBisCO, large subunit, small (N-terminal) domain
家族 Family familyd.58.9.0 — automated matches
结构域编号 domain_idd2v6ab1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.1 — TIM beta/alpha-barrel
超家族 Superfamily superfamilyc.1.14 — RuBisCo, C-terminal domain
家族 Family familyc.1.14.1 — RuBisCo, large subunit, C-terminal domain
结构域编号 domain_idd2v6ab2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.58 — Ferredoxin-like
超家族 Superfamily superfamilyd.58.9 — RuBisCO, large subunit, small (N-terminal) domain
家族 Family familyd.58.9.0 — automated matches
结构域编号 domain_idd2v6ac1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.1 — TIM beta/alpha-barrel
超家族 Superfamily superfamilyc.1.14 — RuBisCo, C-terminal domain
家族 Family familyc.1.14.1 — RuBisCo, large subunit, C-terminal domain
结构域编号 domain_idd2v6ac2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.58 — Ferredoxin-like
超家族 Superfamily superfamilyd.58.9 — RuBisCO, large subunit, small (N-terminal) domain
家族 Family familyd.58.9.0 — automated matches
结构域编号 domain_idd2v6ad1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.1 — TIM beta/alpha-barrel
超家族 Superfamily superfamilyc.1.14 — RuBisCo, C-terminal domain
家族 Family familyc.1.14.1 — RuBisCo, large subunit, C-terminal domain
结构域编号 domain_idd2v6ad2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.58 — Ferredoxin-like
超家族 Superfamily superfamilyd.58.9 — RuBisCO, large subunit, small (N-terminal) domain
家族 Family familyd.58.9.0 — automated matches
结构域编号 domain_idd2v6ae1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.1 — TIM beta/alpha-barrel
超家族 Superfamily superfamilyc.1.14 — RuBisCo, C-terminal domain
家族 Family familyc.1.14.1 — RuBisCo, large subunit, C-terminal domain
结构域编号 domain_idd2v6ae2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.58 — Ferredoxin-like
超家族 Superfamily superfamilyd.58.9 — RuBisCO, large subunit, small (N-terminal) domain
家族 Family familyd.58.9.0 — automated matches
结构域编号 domain_idd2v6af1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.1 — TIM beta/alpha-barrel
超家族 Superfamily superfamilyc.1.14 — RuBisCo, C-terminal domain
家族 Family familyc.1.14.1 — RuBisCo, large subunit, C-terminal domain
结构域编号 domain_idd2v6af2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.58 — Ferredoxin-like
超家族 Superfamily superfamilyd.58.9 — RuBisCO, large subunit, small (N-terminal) domain
家族 Family familyd.58.9.0 — automated matches
结构域编号 domain_idd2v6ag1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.1 — TIM beta/alpha-barrel
超家族 Superfamily superfamilyc.1.14 — RuBisCo, C-terminal domain
家族 Family familyc.1.14.1 — RuBisCo, large subunit, C-terminal domain
结构域编号 domain_idd2v6ag2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.58 — Ferredoxin-like
超家族 Superfamily superfamilyd.58.9 — RuBisCO, large subunit, small (N-terminal) domain
家族 Family familyd.58.9.0 — automated matches
结构域编号 domain_idd2v6ah1
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.1 — TIM beta/alpha-barrel
超家族 Superfamily superfamilyc.1.14 — RuBisCo, C-terminal domain
家族 Family familyc.1.14.1 — RuBisCo, large subunit, C-terminal domain
结构域编号 domain_idd2v6ah2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.58 — Ferredoxin-like
超家族 Superfamily superfamilyd.58.9 — RuBisCO, large subunit, small (N-terminal) domain
家族 Family familyd.58.9.0 — automated matches
结构域编号 domain_idd2v6ai_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.73 — RuBisCO, small subunit
超家族 Superfamily superfamilyd.73.1 — RuBisCO, small subunit
家族 Family familyd.73.1.1 — RuBisCO, small subunit
结构域编号 domain_idd2v6aj_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.73 — RuBisCO, small subunit
超家族 Superfamily superfamilyd.73.1 — RuBisCO, small subunit
家族 Family familyd.73.1.1 — RuBisCO, small subunit
结构域编号 domain_idd2v6ak_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.73 — RuBisCO, small subunit
超家族 Superfamily superfamilyd.73.1 — RuBisCO, small subunit
家族 Family familyd.73.1.1 — RuBisCO, small subunit
结构域编号 domain_idd2v6al_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.73 — RuBisCO, small subunit
超家族 Superfamily superfamilyd.73.1 — RuBisCO, small subunit
家族 Family familyd.73.1.1 — RuBisCO, small subunit
结构域编号 domain_idd2v6am_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.73 — RuBisCO, small subunit
超家族 Superfamily superfamilyd.73.1 — RuBisCO, small subunit
家族 Family familyd.73.1.1 — RuBisCO, small subunit
结构域编号 domain_idd2v6an_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.73 — RuBisCO, small subunit
超家族 Superfamily superfamilyd.73.1 — RuBisCO, small subunit
家族 Family familyd.73.1.1 — RuBisCO, small subunit
结构域编号 domain_idd2v6ao_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.73 — RuBisCO, small subunit
超家族 Superfamily superfamilyd.73.1 — RuBisCO, small subunit
家族 Family familyd.73.1.1 — RuBisCO, small subunit
结构域编号 domain_idd2v6ap_
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.73 — RuBisCO, small subunit
超家族 Superfamily superfamilyd.73.1 — RuBisCO, small subunit
家族 Family familyd.73.1.1 — RuBisCO, small subunit

CATH v4.4 (24 domains)

结构域编号 domain_id2v6aA01
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily150 — RuBisCO large subunit, N-terminal domain
结构域编号 domain_id2v6aA02
类 Class class3 — Alpha Beta
架构 Architecture architecture20 — Alpha-Beta Barrel
拓扑 Topology topology20 — TIM Barrel
同源超家族 H-superfamily homologous superfamily110 — Ribulose bisphosphate carboxylase, large subunit, C-terminal domain
结构域编号 domain_id2v6aB01
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily150 — RuBisCO large subunit, N-terminal domain
结构域编号 domain_id2v6aB02
类 Class class3 — Alpha Beta
架构 Architecture architecture20 — Alpha-Beta Barrel
拓扑 Topology topology20 — TIM Barrel
同源超家族 H-superfamily homologous superfamily110 — Ribulose bisphosphate carboxylase, large subunit, C-terminal domain
结构域编号 domain_id2v6aC01
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily150 — RuBisCO large subunit, N-terminal domain
结构域编号 domain_id2v6aC02
类 Class class3 — Alpha Beta
架构 Architecture architecture20 — Alpha-Beta Barrel
拓扑 Topology topology20 — TIM Barrel
同源超家族 H-superfamily homologous superfamily110 — Ribulose bisphosphate carboxylase, large subunit, C-terminal domain
结构域编号 domain_id2v6aD01
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily150 — RuBisCO large subunit, N-terminal domain
结构域编号 domain_id2v6aD02
类 Class class3 — Alpha Beta
架构 Architecture architecture20 — Alpha-Beta Barrel
拓扑 Topology topology20 — TIM Barrel
同源超家族 H-superfamily homologous superfamily110 — Ribulose bisphosphate carboxylase, large subunit, C-terminal domain
结构域编号 domain_id2v6aE01
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily150 — RuBisCO large subunit, N-terminal domain
结构域编号 domain_id2v6aE02
类 Class class3 — Alpha Beta
架构 Architecture architecture20 — Alpha-Beta Barrel
拓扑 Topology topology20 — TIM Barrel
同源超家族 H-superfamily homologous superfamily110 — Ribulose bisphosphate carboxylase, large subunit, C-terminal domain
结构域编号 domain_id2v6aF01
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily150 — RuBisCO large subunit, N-terminal domain
结构域编号 domain_id2v6aF02
类 Class class3 — Alpha Beta
架构 Architecture architecture20 — Alpha-Beta Barrel
拓扑 Topology topology20 — TIM Barrel
同源超家族 H-superfamily homologous superfamily110 — Ribulose bisphosphate carboxylase, large subunit, C-terminal domain
结构域编号 domain_id2v6aG01
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily150 — RuBisCO large subunit, N-terminal domain
结构域编号 domain_id2v6aG02
类 Class class3 — Alpha Beta
架构 Architecture architecture20 — Alpha-Beta Barrel
拓扑 Topology topology20 — TIM Barrel
同源超家族 H-superfamily homologous superfamily110 — Ribulose bisphosphate carboxylase, large subunit, C-terminal domain
结构域编号 domain_id2v6aH01
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology70 — Alpha-Beta Plaits
同源超家族 H-superfamily homologous superfamily150 — RuBisCO large subunit, N-terminal domain
结构域编号 domain_id2v6aH02
类 Class class3 — Alpha Beta
架构 Architecture architecture20 — Alpha-Beta Barrel
拓扑 Topology topology20 — TIM Barrel
同源超家族 H-superfamily homologous superfamily110 — Ribulose bisphosphate carboxylase, large subunit, C-terminal domain
结构域编号 domain_id2v6aI00
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology190 — Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase
同源超家族 H-superfamily homologous superfamily10 — Ribulose bisphosphate carboxylase, small subunit
结构域编号 domain_id2v6aJ00
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology190 — Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase
同源超家族 H-superfamily homologous superfamily10 — Ribulose bisphosphate carboxylase, small subunit
结构域编号 domain_id2v6aK00
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology190 — Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase
同源超家族 H-superfamily homologous superfamily10 — Ribulose bisphosphate carboxylase, small subunit
结构域编号 domain_id2v6aL00
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology190 — Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase
同源超家族 H-superfamily homologous superfamily10 — Ribulose bisphosphate carboxylase, small subunit
结构域编号 domain_id2v6aM00
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology190 — Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase
同源超家族 H-superfamily homologous superfamily10 — Ribulose bisphosphate carboxylase, small subunit
结构域编号 domain_id2v6aN00
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology190 — Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase
同源超家族 H-superfamily homologous superfamily10 — Ribulose bisphosphate carboxylase, small subunit
结构域编号 domain_id2v6aO00
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology190 — Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase
同源超家族 H-superfamily homologous superfamily10 — Ribulose bisphosphate carboxylase, small subunit
结构域编号 domain_id2v6aP00
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology190 — Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase
同源超家族 H-superfamily homologous superfamily10 — Ribulose bisphosphate carboxylase, small subunit
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7. 引用文献 (1)