2v98

Structure of the complex of TcAChE with 1-(2-nitrophenyl)-2,2,2- trifluoroethyl-arsenocholine after a 9 seconds annealing to room temperature, during the first 5 seconds of which laser irradiation at 266nm took place

Method: X-RAY DIFFRACTION Dmax: 129.2 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

ACETYLCHOLINESTERASE

OrganismNot specified

UniProt P04058

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 22–558 Chain B; UniProt 22–558 Not recorded CL CHLORIDE ION × 1 CFQ 1-(2-nitrophenyl)-2,2,2-trifluoroethyl]-arsenocholine × 4 NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 4 X-RAY DIFFRACTION X-ray crystallization conditions:pH 6;277 K;32% PEG200, 150MM MES, PH6, 4 DEG. C. THE CRYSTAL WAS SOAKED IN A MOTHER LIQUOR SOLUTION CONTAINING 0.5MM CAGED ARSENOCHOLINE DURING 12 HOURS, IN THE DARK AND AT 4 DEG. C., pH 6.0 Resolution 3.00 Å R-free 0.249

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

124 other PDB entries and 125 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name ACES_TORCA
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–537; UniProt 22–558 Author chain B; PDBConstruct 1–537; UniProt 22–558

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 2v98

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 2v98
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2. Structure Basics 2. Structure Basics

Entry ID entry_id2v98
Deposition date deposition_date2007-08-22
Structure title titleStructure of the complex of TcAChE with 1-(2-nitrophenyl)-2,2,2- trifluoroethyl-arsenocholine after a 9 seconds annealing to room temperature, during the first 5 seconds of which laser irradiation at 266nm took place
Keywords keywords;PARTIAL Q-WEIGHTED DIFFERENCE REFINEMENT, NEUROTRANSMITTER DEGRADATION, ALTERNATIVE SPLICING, KINETIC CRYSTALLOGRAPHY, SERINE ESTERASE, CAGED COMPOUNDS, ACETYLCHOLINESTERASE, SYNAPSE, MEMBRANE, BACKDOOR, HYDROLASE, GPI-ANCHOR, LIPOPROTEIN, GLYCOPROTEIN, CELL JUNCTION ;; HYDROLASE
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier38.12
Radius of gyration Rg (electron density) rg_electron38.21
Forward intensity I(0) i0215752000.00
Molecular weight molecular_weight120960.0 kDa
Excluded volume excluded_volume151570 ų
Envelope volume envelope_volume183530 ų
Hydration-shell volume shell_volume41713 ų
Envelope diameter envelope_diameter135.7
Shell Rg shell_rg41.95
Envelope Rg envelope_rg38.06
Shape Rg shape_rg38.18
Total Rg total_rg38.51
Total atoms total_atoms8521
Residues n_residues1060
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax129.2
Rg (real space) rg_real38.50
Rg uncertainty (real space) rg_real_error1.42
I(0) (real space) i0_real2.1580e+08
I(0) uncertainty (real space) i0_real_error3.8250e+06
Rg (reciprocal space) rg_reciprocal38.27
I(0) (reciprocal space) i0_reciprocal215700000.0000
Solution quality estimate total_estimate0.7923
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks3
Primary peak position r_peak_primary31.5
Skewness Skewness skewness0.471
Kurtosis Kurtosis kurtosis-0.608
Angular range angular_range— – 0.2050 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha69880000.0000
Real-space data points n_real_points42
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.592; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.768; Smooth: 0.753

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (5)

7. Fold Classification (SCOP + CATH) 4 domains

SCOP 2.08 (2 domains)

Domain ID domain_idd2v98a_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.69 — alpha/beta-Hydrolases
Superfamily Superfamily superfamilyc.69.1 — alpha/beta-Hydrolases
Family Family familyc.69.1.1 — Acetylcholinesterase-like
Domain ID domain_idd2v98b_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.69 — alpha/beta-Hydrolases
Superfamily Superfamily superfamilyc.69.1 — alpha/beta-Hydrolases
Family Family familyc.69.1.1 — Acetylcholinesterase-like

CATH v4.4 (2 domains)

Domain ID domain_id2v98A00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily1820 — Alpha/Beta hydrolase fold, catalytic domain
Domain ID domain_id2v98B00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily1820 — Alpha/Beta hydrolase fold, catalytic domain

8. Citations (1)

9. Files and Curves (10)