7aiv

Crystal structure of Torpedo Californica acetylcholinesterase in complex with 4-{[(3-Chloro-6,7,10,11-tetrahydro-9-methyl-7,11-methanocycloocta[b]quinolin-12-yl)amino]methyl}-N-(4-hydroxy-3-methoxybenzyl)benzamide

Method: X-RAY DIFFRACTION Dmax: 125.7 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Acetylcholinesterase

OrganismNot specified

UniProt P04058

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 1–586 Chain B; UniProt 1–586 Not recorded 8UE 4-{[(3-Chloro-6,7,10,11-tetrahydro-9-methyl-7,11-methanocycloocta[b]quinolin-12-yl)amino]methyl}-N-(4-hydroxy-3-methoxybenzyl)benzamide × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;277 K;50 mM MES 28-32% PEG 200 Resolution 2.55 Å R-free 0.262

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

124 other PDB entries and 125 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name ACES_TETCF
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–586; UniProt 1–586 Author chain B; PDBConstruct 1–586; UniProt 1–586

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 7aiv

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 7aiv
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2. Structure Basics 2. Structure Basics

Entry ID entry_id7aiv
Deposition date deposition_date2020-09-28
Structure title titleCrystal structure of Torpedo Californica acetylcholinesterase in complex with 4-{[(3-Chloro-6,7,10,11-tetrahydro-9-methyl-7,11-methanocycloocta[b]quinolin-12-yl)amino]methyl}-N-(4-hydroxy-3-methoxybenzyl)benzamide
Keywords keywordsTorpedo Californica acetylcholinesterase, AD, alzheimer disease, HYDROLASE; HYDROLASE
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier37.50
Radius of gyration Rg (electron density) rg_electron37.29
Forward intensity I(0) i0215905000.00
Molecular weight molecular_weight120570.0 kDa
Excluded volume excluded_volume151070 ų
Envelope volume envelope_volume186710 ų
Hydration-shell volume shell_volume42532 ų
Envelope diameter envelope_diameter131.1
Shell Rg shell_rg42.13
Envelope Rg envelope_rg37.15
Shape Rg shape_rg37.26
Total Rg total_rg37.68
Total atoms total_atoms8515
Residues n_residues1064
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax125.7
Rg (real space) rg_real37.77
Rg uncertainty (real space) rg_real_error1.19
I(0) (real space) i0_real2.1590e+08
I(0) uncertainty (real space) i0_real_error4.0340e+06
Rg (reciprocal space) rg_reciprocal37.61
I(0) (reciprocal space) i0_reciprocal215900000.0000
Solution quality estimate total_estimate0.8309
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary32.9
Skewness Skewness skewness0.441
Kurtosis Kurtosis kurtosis-0.597
Angular range angular_range— – 0.2100 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha70260000.0000
Real-space data points n_real_points43
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.714; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.888; Smooth: 0.769

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

8. Citations (1)

9. Files and Curves (10)