PICORNAIN 3C
HUMAN RHINOVIRUS SP.
State in the Current Structure
| Assembly | Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Associated Components | Method and Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|
| 1 | Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count | Chain A; UniProt 1508–1687 | Not recorded | 7L4 2-PHENYLQUINOLIN-4-OL × 1 | X-RAY DIFFRACTION mmCIF provides none of the parsed experimental conditions | Resolution 2.40 Å R-free 0.288 |
Other States of the Same Protein in the Database
Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.
| Other PDB | Difference from Current Entry 2XYA | Assembly / Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Non-polymers | Method and Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|---|
| 1A3R FAB FRAGMENT (ANTIBODY 8F5) COMPLEXED WITH PEPTIDE FROM HUMAN RHINOVIRUS (SEROTYPE 2) VIRAL CAPSID PROTEIN VP2 (RESIDUES 156-170) Deposited 1998-01-23 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric |
Chain P
225–239(15 aa)
Fragment:RESIDUES 156 - 170
|
Non-standard monomer:Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5;FAB-PEPTIDE COMPLEX WAS CRYSTALLIZED FROM 0.9 M SODIUM CITRATE, 25 MM SODIUM CHLORIDE, 50 MM TRIS-HCL, PH 7.75, pH 7.5
|
Resolution 2.10 Å |
| 1CQQ TYPE 2 RHINOVIRUS 3C PROTEASE WITH AG7088 INHIBITOR Deposited 1999-08-10 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain A
1508–1687(180 aa)
|
Not recorded | AG7 4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;286 K;20% PEG10K, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 13K
|
Resolution 1.85 Å |
| 1FPN HUMAN RHINOVIRUS SEROTYPE 2 (HRV2) Deposited 2000-08-31 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 240 PDB declaration: 240-MERIC |
Chain 1
568–856(289 aa)
Chain 2
70–330(261 aa)
Chain 3
331–567(237 aa)
Chain 4
2–69(68 aa)
|
Not recorded | DAO LAURIC ACID × 60 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;ammonium sulphate,
potassium phosphate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
|
Resolution 2.60 Å |
| 1FPN HUMAN RHINOVIRUS SEROTYPE 2 (HRV2) Deposited 2000-08-31 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain 1
568–856(289 aa)
Chain 2
70–330(261 aa)
Chain 3
331–567(237 aa)
Chain 4
2–69(68 aa)
|
Not recorded | DAO LAURIC ACID × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;ammonium sulphate,
potassium phosphate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
|
Resolution 2.60 Å |
| 1FPN HUMAN RHINOVIRUS SEROTYPE 2 (HRV2) Deposited 2000-08-31 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein homooligomer Homooligomer;Protein × 20 PDB declaration: eicosameric |
Chain 1
568–856(289 aa)
Chain 2
70–330(261 aa)
Chain 3
331–567(237 aa)
Chain 4
2–69(68 aa)
|
Not recorded | DAO LAURIC ACID × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;ammonium sulphate,
potassium phosphate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
|
Resolution 2.60 Å |
| 1FPN HUMAN RHINOVIRUS SEROTYPE 2 (HRV2) Deposited 2000-08-31 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 4 Protein homooligomer Homooligomer;Protein × 24 PDB declaration: 24-meric |
Chain 1
568–856(289 aa)
Chain 2
70–330(261 aa)
Chain 3
331–567(237 aa)
Chain 4
2–69(68 aa)
|
Not recorded | DAO LAURIC ACID × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;ammonium sulphate,
potassium phosphate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
|
Resolution 2.60 Å |
| 1FPN HUMAN RHINOVIRUS SEROTYPE 2 (HRV2) Deposited 2000-08-31 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 5 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain 1
568–856(289 aa)
Chain 2
70–330(261 aa)
Chain 3
331–567(237 aa)
Chain 4
2–69(68 aa)
|
Not recorded | DAO LAURIC ACID × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;ammonium sulphate,
potassium phosphate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
|
Resolution 2.60 Å |
| 1FPN HUMAN RHINOVIRUS SEROTYPE 2 (HRV2) Deposited 2000-08-31 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 6 Protein homooligomer Homooligomer;Protein × 60 PDB declaration: 60-meric |
Chain 1
568–856(289 aa)
Chain 2
70–330(261 aa)
Chain 3
331–567(237 aa)
Chain 4
2–69(68 aa)
|
Not recorded | DAO LAURIC ACID × 15 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;ammonium sulphate,
potassium phosphate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
|
Resolution 2.60 Å |
| 1V9U Human Rhinovirus 2 bound to a fragment of its cellular receptor protein Deposited 2004-02-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer;Protein × 300 PDB declaration: complete icosahedral assembly |
Chain 1
568–856(289 aa)
Chain 2
70–330(261 aa)
Chain 3
331–567(237 aa)
Chain 4
2–69(68 aa)
|
Not recorded | DAO LAURIC ACID × 60 CA CALCIUM ION × 60 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;Ammonim sulfate, sodium/potassium phosphate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 3.60 Å R-free 0.295 |
| 1V9U Human Rhinovirus 2 bound to a fragment of its cellular receptor protein Deposited 2004-02-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer;Protein × 5 PDB declaration: pentameric |
Chain 1
568–856(289 aa)
Chain 2
70–330(261 aa)
Chain 3
331–567(237 aa)
Chain 4
2–69(68 aa)
|
Not recorded | DAO LAURIC ACID × 1 CA CALCIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;Ammonim sulfate, sodium/potassium phosphate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 3.60 Å R-free 0.295 |
| 1V9U Human Rhinovirus 2 bound to a fragment of its cellular receptor protein Deposited 2004-02-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer;Protein × 25 PDB declaration: 25-meric |
Chain 1
568–856(289 aa)
Chain 2
70–330(261 aa)
Chain 3
331–567(237 aa)
Chain 4
2–69(68 aa)
|
Not recorded | DAO LAURIC ACID × 5 CA CALCIUM ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;Ammonim sulfate, sodium/potassium phosphate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 3.60 Å R-free 0.295 |
| 1V9U Human Rhinovirus 2 bound to a fragment of its cellular receptor protein Deposited 2004-02-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 4 Protein heterocomplex Heteromer;Protein × 30 PDB declaration: 30-meric |
Chain 1
568–856(289 aa)
Chain 2
70–330(261 aa)
Chain 3
331–567(237 aa)
Chain 4
2–69(68 aa)
|
Not recorded | DAO LAURIC ACID × 6 CA CALCIUM ION × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;Ammonim sulfate, sodium/potassium phosphate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 3.60 Å R-free 0.295 |
| 1V9U Human Rhinovirus 2 bound to a fragment of its cellular receptor protein Deposited 2004-02-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 5 Protein heterocomplex Heteromer;Protein × 5 PDB declaration: pentameric |
Chain 1
568–856(289 aa)
Chain 2
70–330(261 aa)
Chain 3
331–567(237 aa)
Chain 4
2–69(68 aa)
|
Not recorded | DAO LAURIC ACID × 1 CA CALCIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;Ammonim sulfate, sodium/potassium phosphate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 3.60 Å R-free 0.295 |
| 1V9U Human Rhinovirus 2 bound to a fragment of its cellular receptor protein Deposited 2004-02-03 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 6 Protein heterocomplex Heteromer;Protein × 150 PDB declaration: 150-meric |
Chain 1
568–856(289 aa)
Chain 2
70–330(261 aa)
Chain 3
331–567(237 aa)
Chain 4
2–69(68 aa)
|
Not recorded | DAO LAURIC ACID × 30 CA CALCIUM ION × 30 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;293 K;Ammonim sulfate, sodium/potassium phosphate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 3.60 Å R-free 0.295 |
| 2HRV 2A CYSTEINE PROTEINASE FROM HUMAN RHINOVIRUS 2 Deposited 1999-04-29 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain A
851–992(142 aa)
|
Not recorded | ZN ZINC ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8;pH 8.00
|
Resolution 1.95 Å R-free 0.250 |
| 2HRV 2A CYSTEINE PROTEINASE FROM HUMAN RHINOVIRUS 2 Deposited 1999-04-29 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain B
851–992(142 aa)
|
Not recorded | ZN ZINC ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8;pH 8.00
|
Resolution 1.95 Å R-free 0.250 |
| 3DPR Human rhinovirus 2 bound to a concatamer of the VLDL receptor module V3 Deposited 2008-07-09 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer;Protein × 300 PDB declaration: 300-MERIC |
Chain A
568–856(289 aa)
Chain B
70–330(261 aa)
Chain C
331–567(237 aa)
Chain D
2–69(68 aa)
|
Not recorded | DAO LAURIC ACID × 60 CA CALCIUM ION × 60 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;298 K;Ammonium sulphate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 3.50 Å R-free 0.441 |
| 3DPR Human rhinovirus 2 bound to a concatamer of the VLDL receptor module V3 Deposited 2008-07-09 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein heterocomplex Heteromer;Protein × 5 PDB declaration: pentameric |
Chain A
568–856(289 aa)
Chain B
70–330(261 aa)
Chain C
331–567(237 aa)
Chain D
2–69(68 aa)
|
Not recorded | DAO LAURIC ACID × 1 CA CALCIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;298 K;Ammonium sulphate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 3.50 Å R-free 0.441 |
| 3DPR Human rhinovirus 2 bound to a concatamer of the VLDL receptor module V3 Deposited 2008-07-09 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein heterocomplex Heteromer;Protein × 25 PDB declaration: 25-meric |
Chain A
568–856(289 aa)
Chain B
70–330(261 aa)
Chain C
331–567(237 aa)
Chain D
2–69(68 aa)
|
Not recorded | DAO LAURIC ACID × 5 CA CALCIUM ION × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;298 K;Ammonium sulphate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 3.50 Å R-free 0.441 |
| 3DPR Human rhinovirus 2 bound to a concatamer of the VLDL receptor module V3 Deposited 2008-07-09 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 4 Protein heterocomplex Heteromer;Protein × 30 PDB declaration: 30-meric |
Chain A
568–856(289 aa)
Chain B
70–330(261 aa)
Chain C
331–567(237 aa)
Chain D
2–69(68 aa)
|
Not recorded | DAO LAURIC ACID × 6 CA CALCIUM ION × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;298 K;Ammonium sulphate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 3.50 Å R-free 0.441 |
| 3DPR Human rhinovirus 2 bound to a concatamer of the VLDL receptor module V3 Deposited 2008-07-09 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 5 Protein heterocomplex Heteromer;Protein × 5 PDB declaration: pentameric |
Chain A
568–856(289 aa)
Chain B
70–330(261 aa)
Chain C
331–567(237 aa)
Chain D
2–69(68 aa)
|
Not recorded | DAO LAURIC ACID × 1 CA CALCIUM ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;298 K;Ammonium sulphate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 3.50 Å R-free 0.441 |
| 3DPR Human rhinovirus 2 bound to a concatamer of the VLDL receptor module V3 Deposited 2008-07-09 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 6 Protein heterocomplex Heteromer;Protein × 300 PDB declaration: 300-meric |
Chain A
568–856(289 aa)
Chain B
70–330(261 aa)
Chain C
331–567(237 aa)
Chain D
2–69(68 aa)
|
Not recorded | DAO LAURIC ACID × 60 CA CALCIUM ION × 60 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7;298 K;Ammonium sulphate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 3.50 Å R-free 0.441 |
| 3TN9 X-ray structure of the HRV2 empty capsid (B-particle) Deposited 2011-09-01 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 180 PDB declaration: 180-MERIC |
Chain 1
568–856(289 aa)
Chain 2
70–330(261 aa)
Chain 3
331–567(237 aa)
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;293 K;0.1M sodium acetate pH 6.5 - 8.0, 5% glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 3.00 Å R-free 0.265 |
| 3TN9 X-ray structure of the HRV2 empty capsid (B-particle) Deposited 2011-09-01 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain 1
568–856(289 aa)
Chain 2
70–330(261 aa)
Chain 3
331–567(237 aa)
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;293 K;0.1M sodium acetate pH 6.5 - 8.0, 5% glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 3.00 Å R-free 0.265 |
| 3TN9 X-ray structure of the HRV2 empty capsid (B-particle) Deposited 2011-09-01 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein homooligomer Homooligomer;Protein × 15 PDB declaration: pentadecameric |
Chain 1
568–856(289 aa)
Chain 2
70–330(261 aa)
Chain 3
331–567(237 aa)
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;293 K;0.1M sodium acetate pH 6.5 - 8.0, 5% glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 3.00 Å R-free 0.265 |
| 3TN9 X-ray structure of the HRV2 empty capsid (B-particle) Deposited 2011-09-01 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 4 Protein homooligomer Homooligomer;Protein × 18 PDB declaration: octadecameric |
Chain 1
568–856(289 aa)
Chain 2
70–330(261 aa)
Chain 3
331–567(237 aa)
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;293 K;0.1M sodium acetate pH 6.5 - 8.0, 5% glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 3.00 Å R-free 0.265 |
| 3TN9 X-ray structure of the HRV2 empty capsid (B-particle) Deposited 2011-09-01 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 5 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain 1
568–856(289 aa)
Chain 2
70–330(261 aa)
Chain 3
331–567(237 aa)
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;293 K;0.1M sodium acetate pH 6.5 - 8.0, 5% glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 3.00 Å R-free 0.265 |
| 3TN9 X-ray structure of the HRV2 empty capsid (B-particle) Deposited 2011-09-01 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 6 Protein homooligomer Homooligomer;Protein × 45 PDB declaration: 45-meric |
Chain 1
568–856(289 aa)
Chain 2
70–330(261 aa)
Chain 3
331–567(237 aa)
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;293 K;0.1M sodium acetate pH 6.5 - 8.0, 5% glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 3.00 Å R-free 0.265 |
| 3VDD Structure of HRV2 capsid complexed with antiviral compound BTA798 Deposited 2012-01-05 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 240 PDB declaration: 240-MERIC |
Chain A
568–850(283 aa)
Fragment:UNP residues 568-850
Chain B
70–330(261 aa)
Fragment:UNP residues 70-330
Chain C
331–567(237 aa)
Fragment:UNP residues 331-567
Chain D
1–69(69 aa)
Fragment:UNP residues 1-69
|
Not recorded | BT8 3-ethoxy-6-{2-[1-(6-methylpyridazin-3-yl)piperidin-4-yl]ethoxy}-1,2-benzoxazole × 60 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5;298 K;0.4-0.7 M ammonium sulfate, pH 7.5, HANGING DROP, temperature 298K
|
Resolution 3.20 Å R-free 0.273 |
| 3VDD Structure of HRV2 capsid complexed with antiviral compound BTA798 Deposited 2012-01-05 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain A
568–850(283 aa)
Fragment:UNP residues 568-850
Chain B
70–330(261 aa)
Fragment:UNP residues 70-330
Chain C
331–567(237 aa)
Fragment:UNP residues 331-567
Chain D
1–69(69 aa)
Fragment:UNP residues 1-69
|
Not recorded | BT8 3-ethoxy-6-{2-[1-(6-methylpyridazin-3-yl)piperidin-4-yl]ethoxy}-1,2-benzoxazole × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5;298 K;0.4-0.7 M ammonium sulfate, pH 7.5, HANGING DROP, temperature 298K
|
Resolution 3.20 Å R-free 0.273 |
| 3VDD Structure of HRV2 capsid complexed with antiviral compound BTA798 Deposited 2012-01-05 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein homooligomer Homooligomer;Protein × 20 PDB declaration: eicosameric |
Chain A
568–850(283 aa)
Fragment:UNP residues 568-850
Chain B
70–330(261 aa)
Fragment:UNP residues 70-330
Chain C
331–567(237 aa)
Fragment:UNP residues 331-567
Chain D
1–69(69 aa)
Fragment:UNP residues 1-69
|
Not recorded | BT8 3-ethoxy-6-{2-[1-(6-methylpyridazin-3-yl)piperidin-4-yl]ethoxy}-1,2-benzoxazole × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5;298 K;0.4-0.7 M ammonium sulfate, pH 7.5, HANGING DROP, temperature 298K
|
Resolution 3.20 Å R-free 0.273 |
| 3VDD Structure of HRV2 capsid complexed with antiviral compound BTA798 Deposited 2012-01-05 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 4 Protein homooligomer Homooligomer;Protein × 24 PDB declaration: 24-meric |
Chain A
568–850(283 aa)
Fragment:UNP residues 568-850
Chain B
70–330(261 aa)
Fragment:UNP residues 70-330
Chain C
331–567(237 aa)
Fragment:UNP residues 331-567
Chain D
1–69(69 aa)
Fragment:UNP residues 1-69
|
Not recorded | BT8 3-ethoxy-6-{2-[1-(6-methylpyridazin-3-yl)piperidin-4-yl]ethoxy}-1,2-benzoxazole × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5;298 K;0.4-0.7 M ammonium sulfate, pH 7.5, HANGING DROP, temperature 298K
|
Resolution 3.20 Å R-free 0.273 |
| 3VDD Structure of HRV2 capsid complexed with antiviral compound BTA798 Deposited 2012-01-05 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 5 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain A
568–850(283 aa)
Fragment:UNP residues 568-850
Chain B
70–330(261 aa)
Fragment:UNP residues 70-330
Chain C
331–567(237 aa)
Fragment:UNP residues 331-567
Chain D
1–69(69 aa)
Fragment:UNP residues 1-69
|
Not recorded | BT8 3-ethoxy-6-{2-[1-(6-methylpyridazin-3-yl)piperidin-4-yl]ethoxy}-1,2-benzoxazole × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5;298 K;0.4-0.7 M ammonium sulfate, pH 7.5, HANGING DROP, temperature 298K
|
Resolution 3.20 Å R-free 0.273 |
| 3VDD Structure of HRV2 capsid complexed with antiviral compound BTA798 Deposited 2012-01-05 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 6 Protein homooligomer Homooligomer;Protein × 120 PDB declaration: 120-meric |
Chain A
568–850(283 aa)
Fragment:UNP residues 568-850
Chain B
70–330(261 aa)
Fragment:UNP residues 70-330
Chain C
331–567(237 aa)
Fragment:UNP residues 331-567
Chain D
1–69(69 aa)
Fragment:UNP residues 1-69
|
Not recorded | BT8 3-ethoxy-6-{2-[1-(6-methylpyridazin-3-yl)piperidin-4-yl]ethoxy}-1,2-benzoxazole × 30 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 7.5;298 K;0.4-0.7 M ammonium sulfate, pH 7.5, HANGING DROP, temperature 298K
|
Resolution 3.20 Å R-free 0.273 |
| 4L3B X-ray structure of the HRV2 A particle uncoating intermediate Deposited 2013-06-05 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 180 PDB declaration: 180-meric |
Chain A
568–856(289 aa)
Fragment:UNP residues 568-856
Chain B
70–330(261 aa)
Fragment:UNP residues 70-330
Chain C
331–567(237 aa)
Fragment:UNP residues 331-567
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;0.5 M ammonium sulfate, 1 M sodium/potassium phosphate, 5% glycerol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 6.50 Å R-free 0.320 |
| 4L3B X-ray structure of the HRV2 A particle uncoating intermediate Deposited 2013-06-05 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
568–856(289 aa)
Fragment:UNP residues 568-856
Chain B
70–330(261 aa)
Fragment:UNP residues 70-330
Chain C
331–567(237 aa)
Fragment:UNP residues 331-567
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;0.5 M ammonium sulfate, 1 M sodium/potassium phosphate, 5% glycerol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 6.50 Å R-free 0.320 |
| 4L3B X-ray structure of the HRV2 A particle uncoating intermediate Deposited 2013-06-05 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein homooligomer Homooligomer;Protein × 15 PDB declaration: pentadecameric |
Chain A
568–856(289 aa)
Fragment:UNP residues 568-856
Chain B
70–330(261 aa)
Fragment:UNP residues 70-330
Chain C
331–567(237 aa)
Fragment:UNP residues 331-567
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;0.5 M ammonium sulfate, 1 M sodium/potassium phosphate, 5% glycerol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 6.50 Å R-free 0.320 |
| 4L3B X-ray structure of the HRV2 A particle uncoating intermediate Deposited 2013-06-05 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 4 Protein homooligomer Homooligomer;Protein × 18 PDB declaration: octadecameric |
Chain A
568–856(289 aa)
Fragment:UNP residues 568-856
Chain B
70–330(261 aa)
Fragment:UNP residues 70-330
Chain C
331–567(237 aa)
Fragment:UNP residues 331-567
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;0.5 M ammonium sulfate, 1 M sodium/potassium phosphate, 5% glycerol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 6.50 Å R-free 0.320 |
| 4L3B X-ray structure of the HRV2 A particle uncoating intermediate Deposited 2013-06-05 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 5 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
568–856(289 aa)
Fragment:UNP residues 568-856
Chain B
70–330(261 aa)
Fragment:UNP residues 70-330
Chain C
331–567(237 aa)
Fragment:UNP residues 331-567
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;0.5 M ammonium sulfate, 1 M sodium/potassium phosphate, 5% glycerol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 6.50 Å R-free 0.320 |
| 4L3B X-ray structure of the HRV2 A particle uncoating intermediate Deposited 2013-06-05 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 6 Protein homooligomer Homooligomer;Protein × 45 PDB declaration: 45-meric |
Chain A
568–856(289 aa)
Fragment:UNP residues 568-856
Chain B
70–330(261 aa)
Fragment:UNP residues 70-330
Chain C
331–567(237 aa)
Fragment:UNP residues 331-567
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;0.5 M ammonium sulfate, 1 M sodium/potassium phosphate, 5% glycerol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 6.50 Å R-free 0.320 |
| 5FX5 Novel inhibitors of human rhinovirus 3C protease Deposited 2016-02-24 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain A
1508–1687(180 aa)
Fragment:3C PROTEASE, RESIDUES 1508-1687
|
Not recorded | GOL GLYCEROL × 2 PG4 TETRAETHYLENE GLYCOL × 1 PGE TRIETHYLENE GLYCOL × 1 HOV ethyl (4R)-4-[[(2S,3R)-1-[(2S)-3-methyl-2-[(5-methyl-1,2-oxazol-3-yl)carbonylamino]butanoyl]-3-phenyl-pyrrolidin-2-yl]carbonylamino]-5-[(3S)-2-oxidanylidenepyrrolidin-3-yl]pentanoate × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
30% PEG400, 100 MM TRIS-HCL PH 8.5, 200 MM MGCL2
|
Resolution 1.70 Å R-free 0.211 |
| 5FX6 Novel inhibitors of human rhinovirus 3C protease Deposited 2016-02-24 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain A
1508–1687(180 aa)
Fragment:3C PROTEASE, RESIDUES 1508-1687
|
Not recorded | 6OY ethyl (4R)-4-[[(2S,4S)-1-[(2S)-3-methyl-2-[(5-methyl-1,2-oxazol-3-yl)carbonylamino]butanoyl]-4-phenyl-pyrrolidin-2-yl]carbonylamino]-5-[(3S)-2-oxidanylidenepyrrolidin-3-yl]pentanoate × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
0.2 M CACL2, 0,1 M TRIS PH 8.5, 25% PEG4000
|
Resolution 1.45 Å R-free 0.186 |
| 6FFN Structure-based design and synthesis of macrocyclic human rhinovirus 3C protease inhibitors Deposited 2018-01-08 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain A
1508–1687(180 aa)
|
Not recorded | D8K ~{N}-[(5~{S},8~{S},11~{S},15~{R})-8-[(4-fluorophenyl)methyl]-5-(hydroxymethyl)-2,7,10,14-tetrakis(oxidanylidene)-1,6,9,13-tetrazabicyclo[13.3.0]octadecan-11-yl]-5-methyl-1,2-oxazole-3-carboxamide × 1 SO4 SULFATE ION × 1 DMS DIMETHYL SULFOXIDE × 1 GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;2.0 M Ammonium Sulfate
0.1 M Na Acetate, pH 4.5,
|
Resolution 1.75 Å R-free 0.170 |
| 6FFS Structure-based design and synthesis of macrocyclic human rhinovirus 3C protease inhibitors Deposited 2018-01-09 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain A
1508–1687(180 aa)
|
Not recorded | D8E ~{N}-[(2~{S},5~{S},14~{S})-2-[(4-fluorophenyl)methyl]-5-(hydroxymethyl)-9-methyl-3,8,15-tris(oxidanylidene)-1,4,9-triazacyclopentadec-14-yl]-5-methyl-1,2-oxazole-3-carboxamide × 1 SO4 SULFATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;277 K;2.0 M Ammonium Sulfate
0.1 M Na Acetate, pH 4.5
|
Resolution 1.86 Å R-free 0.172 |
| 7ARA Rhinovirus A2 2A protease in complex with zVAM.fmk Deposited 2020-10-23 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain A
851–992(142 aa)
Chain B
851–992(142 aa)
|
Not recorded | S7N (phenylmethyl) ~{N}-[(2~{R})-3-methyl-1-[[(2~{S})-1-[[(3~{S})-1-methylsulfanyl-4-oxidanylidene-pentan-3-yl]amino]-1-oxidanylidene-propan-2-yl]amino]-1-oxidanylidene-butan-2-yl]carbamate × 1 ZN ZINC ION × 2 S7Q (phenylmethyl) ~{N}-[(2~{S})-3-methyl-1-[[(2~{R})-1-[[(3~{R})-1-methylsulfanyl-4-oxidanylidene-pentan-3-yl]amino]-1-oxidanylidene-propan-2-yl]amino]-1-oxidanylidene-butan-2-yl]carbamate × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277.15 K;7.5 % PEG8000, 0.3 M KCNS, 5 % 2-methyl-2-butanol, 10 % glycerol, 10 mM b-mercaptoethanol and 50 mM sodium-potassium phosphate buffer pH 8.0
|
Resolution 2.24 Å R-free 0.257 |
| 8AY4 Human rhinovirus 2 virion in situ Deposited 2022-09-01 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer;Protein × 240 PDB declaration: 240-meric |
Chain A
582–850(269 aa)
Chain B
81–330(250 aa)
Chain C
331–567(237 aa)
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.70 Å |
| 8AY5 Human rhinovirus 2 empty particle in situ Deposited 2022-09-01 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 180 PDB declaration: 180-meric |
Chain A
600–850(251 aa)
Chain B
81–330(250 aa)
Chain C
331–567(237 aa)
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 7.10 Å |
| 9G0B Rhinovirus A2 uncoating intermediate revealing the natural pocket factor (pH 5.8 and 4 degrees Celsius) Deposited 2024-07-07 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 240 PDB declaration: 240-meric |
Chain A
568–850(283 aa)
Chain B
70–330(261 aa)
Chain C
331–567(237 aa)
Chain D
2–69(68 aa)
|
Not recorded | DAO LAURIC ACID × 60 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 5.8;0.1 M phosphate buffer, pH 5.8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.20 Å |
17 other PDB entries and 48 assemblies. Open the comparison page and filter oligomeric states
View Construct and Data Evidence
| UniProt name | POLG_HRV2 |
| Isoform | — |
| PDB entities | 1 |
| Chains and sequence ranges | Author chain A; PDBConstruct 3–182; UniProt 1508–1687 |