← Back to search
3f9k

Two domain fragment of HIV-2 integrase in complex with LEDGF IBD

Method: X-RAY DIFFRACTION
▼

1. Protein Identity and Related Structures Protein Identity & Related Structures

Integrase

Human immunodeficiency virus type 2

UniProt P04584

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 3 PC4 and SFRS1-interacting protein × 1 （O75475） ZINC ION × 2 MAGNESIUM ION × 2 Consistent with protein count
10 Protein heterocomplex Heteromer Protein 3 PC4 and SFRS1-interacting protein × 1 （O75475） ZINC ION × 2 MAGNESIUM ION × 2 Consistent with protein count
11 Protein heterocomplex Heteromer Protein 3 PC4 and SFRS1-interacting protein × 1 （O75475） ZINC ION × 2 MAGNESIUM ION × 2 Consistent with protein count
12 Protein heterocomplex Heteromer Protein 3 PC4 and SFRS1-interacting protein × 1 （O75475） ZINC ION × 2 MAGNESIUM ION × 2 Consistent with protein count
13 Protein heterocomplex Heteromer Protein 9 PC4 and SFRS1-interacting protein × 3 （O75475） ZINC ION × 6 MAGNESIUM ION × 6 Consistent with protein count
14 Protein heterocomplex Heteromer Protein 9 PC4 and SFRS1-interacting protein × 3 （O75475） ZINC ION × 6 MAGNESIUM ION × 6 Consistent with protein count
15 Protein heterocomplex Heteromer Protein 9 PC4 and SFRS1-interacting protein × 3 （O75475） ZINC ION × 6 MAGNESIUM ION × 6 Consistent with protein count
16 Protein heterocomplex Heteromer Protein 9 PC4 and SFRS1-interacting protein × 3 （O75475） ZINC ION × 6 MAGNESIUM ION × 6 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 3 PC4 and SFRS1-interacting protein × 1 （O75475） ZINC ION × 2 MAGNESIUM ION × 2 Consistent with protein count
3 Protein heterocomplex Heteromer Protein 3 PC4 and SFRS1-interacting protein × 1 （O75475） ZINC ION × 2 MAGNESIUM ION × 2 Consistent with protein count
4 Protein heterocomplex Heteromer Protein 3 PC4 and SFRS1-interacting protein × 1 （O75475） ZINC ION × 2 MAGNESIUM ION × 2 Consistent with protein count
5 Protein heterocomplex Heteromer Protein 3 PC4 and SFRS1-interacting protein × 1 （O75475） ZINC ION × 2 MAGNESIUM ION × 2 Consistent with protein count
6 Protein heterocomplex Heteromer Protein 3 PC4 and SFRS1-interacting protein × 1 （O75475） ZINC ION × 2 MAGNESIUM ION × 2 Consistent with protein count
7 Protein heterocomplex Heteromer Protein 3 PC4 and SFRS1-interacting protein × 1 （O75475） ZINC ION × 2 MAGNESIUM ION × 2 Consistent with protein count
8 Protein heterocomplex Heteromer Protein 3 PC4 and SFRS1-interacting protein × 1 （O75475） ZINC ION × 2 MAGNESIUM ION × 2 Consistent with protein count
9 Protein heterocomplex Heteromer Protein 3 PC4 and SFRS1-interacting protein × 1 （O75475） ZINC ION × 2 MAGNESIUM ION × 2 Consistent with protein count

Other States of the Same Protein in the Database

Monomer
2k4e 2k4h 2k4i

3 assemblies

Homodimer
1e0e 1hii 1hsh 1hsh 1hsi 1ida 1ivp 1ivq 1mu2 3ebz 3ec0 3ecg

16 assemblies; showing the first 12

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
2hpe 2hpf 2mip 2mip 3f9k 3f9k 3f9k 3f9k 3f9k 3f9k 3f9k 3f9k

20 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name POL_HV2RO
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 3–210； UniProt 1173–1380 Author chain B； PDBConstruct 3–210； UniProt 1173–1380 Author chain E； PDBConstruct 3–210； UniProt 1173–1380 Author chain F； PDBConstruct 3–210； UniProt 1173–1380 Author chain I； PDBConstruct 3–210； UniProt 1173–1380 Author chain J； PDBConstruct 3–210； UniProt 1173–1380 Author chain M； PDBConstruct 3–210； UniProt 1173–1380 Author chain N； PDBConstruct 3–210； UniProt 1173–1380 Author chain Q； PDBConstruct 3–210； UniProt 1173–1380 Author chain R； PDBConstruct 3–210； UniProt 1173–1380 Author chain U； PDBConstruct 3–210； UniProt 1173–1380 Author chain V； PDBConstruct 3–210； UniProt 1173–1380 Author chain Y； PDBConstruct 3–210； UniProt 1173–1380 Author chain Z； PDBConstruct 3–210； UniProt 1173–1380 Author chain c； PDBConstruct 3–210； UniProt 1173–1380 Author chain d； PDBConstruct 3–210； UniProt 1173–1380 Author chain g； PDBConstruct 3–210； UniProt 1173–1380 Author chain h； PDBConstruct 3–210； UniProt 1173–1380 Author chain k； PDBConstruct 3–210； UniProt 1173–1380 Author chain l； PDBConstruct 3–210； UniProt 1173–1380 Author chain o； PDBConstruct 3–210； UniProt 1173–1380 Author chain p； PDBConstruct 3–210； UniProt 1173–1380 Author chain s； PDBConstruct 3–210； UniProt 1173–1380 Author chain t； PDBConstruct 3–210； UniProt 1173–1380

PC4 and SFRS1-interacting protein

Homo sapiens

UniProt O75475

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 3 Integrase × 2 （P04584） ZINC ION × 2 MAGNESIUM ION × 2 Consistent with protein count
10 Protein heterocomplex Heteromer Protein 3 Integrase × 2 （P04584） ZINC ION × 2 MAGNESIUM ION × 2 Consistent with protein count
11 Protein heterocomplex Heteromer Protein 3 Integrase × 2 （P04584） ZINC ION × 2 MAGNESIUM ION × 2 Consistent with protein count
12 Protein heterocomplex Heteromer Protein 3 Integrase × 2 （P04584） ZINC ION × 2 MAGNESIUM ION × 2 Consistent with protein count
13 Protein heterocomplex Heteromer Protein 9 Integrase × 6 （P04584） ZINC ION × 6 MAGNESIUM ION × 6 Consistent with protein count
14 Protein heterocomplex Heteromer Protein 9 Integrase × 6 （P04584） ZINC ION × 6 MAGNESIUM ION × 6 Consistent with protein count
15 Protein heterocomplex Heteromer Protein 9 Integrase × 6 （P04584） ZINC ION × 6 MAGNESIUM ION × 6 Consistent with protein count
16 Protein heterocomplex Heteromer Protein 9 Integrase × 6 （P04584） ZINC ION × 6 MAGNESIUM ION × 6 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 3 Integrase × 2 （P04584） ZINC ION × 2 MAGNESIUM ION × 2 Consistent with protein count
3 Protein heterocomplex Heteromer Protein 3 Integrase × 2 （P04584） ZINC ION × 2 MAGNESIUM ION × 2 Consistent with protein count
4 Protein heterocomplex Heteromer Protein 3 Integrase × 2 （P04584） ZINC ION × 2 MAGNESIUM ION × 2 Consistent with protein count
5 Protein heterocomplex Heteromer Protein 3 Integrase × 2 （P04584） ZINC ION × 2 MAGNESIUM ION × 2 Consistent with protein count
6 Protein heterocomplex Heteromer Protein 3 Integrase × 2 （P04584） ZINC ION × 2 MAGNESIUM ION × 2 Consistent with protein count
7 Protein heterocomplex Heteromer Protein 3 Integrase × 2 （P04584） ZINC ION × 2 MAGNESIUM ION × 2 Consistent with protein count
8 Protein heterocomplex Heteromer Protein 3 Integrase × 2 （P04584） ZINC ION × 2 MAGNESIUM ION × 2 Consistent with protein count
9 Protein heterocomplex Heteromer Protein 3 Integrase × 2 （P04584） ZINC ION × 2 MAGNESIUM ION × 2 Consistent with protein count

Other States of the Same Protein in the Database

Monomer
1z9e 2m16 3zeh 4fu6 6zv0

5 assemblies

Homodimer
6trj 6tvm

2 assemblies

Homotetramer

None

Other homooligomers
5oym

1 assemblies

Heteromeric or nucleic-acid complex
2b4j 2b4j 2msr 2mtn 2n3a 3f9k 3f9k 3f9k 3f9k 3f9k 3f9k 3f9k

47 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name PSIP1_HUMAN
Isoform —
PDB entities 2
Chains and sequence ranges Author chain C； PDBConstruct 1–89； UniProt 347–435 Author chain G； PDBConstruct 1–89； UniProt 347–435 Author chain K； PDBConstruct 1–89； UniProt 347–435 Author chain O； PDBConstruct 1–89； UniProt 347–435 Author chain S； PDBConstruct 1–89； UniProt 347–435 Author chain W； PDBConstruct 1–89； UniProt 347–435 Author chain a； PDBConstruct 1–89； UniProt 347–435 Author chain e； PDBConstruct 1–89； UniProt 347–435 Author chain i； PDBConstruct 1–89； UniProt 347–435 Author chain m； PDBConstruct 1–89； UniProt 347–435 Author chain q； PDBConstruct 1–89； UniProt 347–435 Author chain u； PDBConstruct 1–89； UniProt 347–435

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

▼

2. Structure Basics 2. Structure Basics

Entry ID entry_id3f9k
Deposition date deposition_date2008-11-14
Structure title titleTwo domain fragment of HIV-2 integrase in complex with LEDGF IBD
Keywords keywords;Protein-protein complex, AIDS, DNA integration, endonuclease, magnesium, metal-binding, multifunctional enzyme, nuclease, nucleotidyltransferase, nucleus, transferase, viral nucleoprotein, virion, DNA-binding, host-virus interaction, transcription, transcription regulation, zinc binding, HHCC motif, VIRAL PROTEIN, RECOMBINATION ;; VIRAL PROTEIN, RECOMBINATION
Experimental Method methodX-RAY DIFFRACTION
▼

3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

3f9k__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

3f9k__assembly_1__model_1 | I(q)

10-2 10-1 105 106 107 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

3f9k__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）25.80 Å
Rg (electron density)25.14 Å
Total Rg25.90 Å
Atom count3895
Residues494
Excluded volume69441 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 3f9k__assembly_1__model_1 trimeric （3） Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 3f9k__assembly_2__model_1 trimeric （3） Success 4.1.3-1-20251215 (887e7ef) View Download
3 1 3f9k__assembly_3__model_1 trimeric （3） Success 4.1.3-1-20251215 (887e7ef) View Download
4 1 3f9k__assembly_4__model_1 trimeric （3） Success 4.1.3-1-20251215 (887e7ef) View Download
5 1 3f9k__assembly_5__model_1 trimeric （3） Success 4.1.3-1-20251215 (887e7ef) View Download
6 1 3f9k__assembly_6__model_1 trimeric （3） Success 4.1.3-1-20251215 (887e7ef) View Download
7 1 3f9k__assembly_7__model_1 trimeric （3） Success 4.1.3-1-20251215 (887e7ef) View Download
8 1 3f9k__assembly_8__model_1 trimeric （3） Success 4.1.3-1-20251215 (887e7ef) View Download
9 1 3f9k__assembly_9__model_1 trimeric （3） Success 4.1.3-1-20251215 (887e7ef) View Download
10 1 3f9k__assembly_10__model_1 trimeric （3） Success 4.1.3-1-20251215 (887e7ef) View Download
11 1 3f9k__assembly_11__model_1 trimeric （3） Success 4.1.3-1-20251215 (887e7ef) View Download
12 1 3f9k__assembly_12__model_1 trimeric （3） Success 4.1.3-1-20251215 (887e7ef) View Download
13 1 3f9k__assembly_13__model_1 nonameric （9） Success 4.1.3-1-20251215 (887e7ef) View Download
14 1 3f9k__assembly_14__model_1 nonameric （9） Success 4.1.3-1-20251215 (887e7ef) View Download
15 1 3f9k__assembly_15__model_1 nonameric （9） Success 4.1.3-1-20251215 (887e7ef) View Download
16 1 3f9k__assembly_16__model_1 nonameric （9） Success 4.1.3-1-20251215 (887e7ef) View Download
▶

4. Crystallography and Experiment 4. Crystallography & Experiment

▶

5. Entities and Polymers Entities & Polymers (4)

▼

6. Fold Classification (SCOP + CATH) 60 domains

CATH v4.4 (60 domains)

Domain ID domain_id3f9kA01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily200 — Integrase, N-terminal zinc-binding domain
Domain ID domain_id3f9kA02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology420 — Nucleotidyltransferase; domain 5
Homologous superfamily homologous superfamily10 — Ribonuclease H-like superfamily/Ribonuclease H
Domain ID domain_id3f9kB01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily200 — Integrase, N-terminal zinc-binding domain
Domain ID domain_id3f9kB02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology420 — Nucleotidyltransferase; domain 5
Homologous superfamily homologous superfamily10 — Ribonuclease H-like superfamily/Ribonuclease H
Domain ID domain_id3f9kC00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology930 — Transcription Elongation Factor S-II; Chain A
Homologous superfamily homologous superfamily10 — Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
Domain ID domain_id3f9kE01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily200 — Integrase, N-terminal zinc-binding domain
Domain ID domain_id3f9kE02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology420 — Nucleotidyltransferase; domain 5
Homologous superfamily homologous superfamily10 — Ribonuclease H-like superfamily/Ribonuclease H
Domain ID domain_id3f9kF01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily200 — Integrase, N-terminal zinc-binding domain
Domain ID domain_id3f9kF02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology420 — Nucleotidyltransferase; domain 5
Homologous superfamily homologous superfamily10 — Ribonuclease H-like superfamily/Ribonuclease H
Domain ID domain_id3f9kG00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology930 — Transcription Elongation Factor S-II; Chain A
Homologous superfamily homologous superfamily10 — Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
Domain ID domain_id3f9kI01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily200 — Integrase, N-terminal zinc-binding domain
Domain ID domain_id3f9kI02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology420 — Nucleotidyltransferase; domain 5
Homologous superfamily homologous superfamily10 — Ribonuclease H-like superfamily/Ribonuclease H
Domain ID domain_id3f9kJ01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily200 — Integrase, N-terminal zinc-binding domain
Domain ID domain_id3f9kJ02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology420 — Nucleotidyltransferase; domain 5
Homologous superfamily homologous superfamily10 — Ribonuclease H-like superfamily/Ribonuclease H
Domain ID domain_id3f9kK00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology930 — Transcription Elongation Factor S-II; Chain A
Homologous superfamily homologous superfamily10 — Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
Domain ID domain_id3f9kM01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily200 — Integrase, N-terminal zinc-binding domain
Domain ID domain_id3f9kM02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology420 — Nucleotidyltransferase; domain 5
Homologous superfamily homologous superfamily10 — Ribonuclease H-like superfamily/Ribonuclease H
Domain ID domain_id3f9kN01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily200 — Integrase, N-terminal zinc-binding domain
Domain ID domain_id3f9kN02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology420 — Nucleotidyltransferase; domain 5
Homologous superfamily homologous superfamily10 — Ribonuclease H-like superfamily/Ribonuclease H
Domain ID domain_id3f9kO00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology930 — Transcription Elongation Factor S-II; Chain A
Homologous superfamily homologous superfamily10 — Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
Domain ID domain_id3f9kQ01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily200 — Integrase, N-terminal zinc-binding domain
Domain ID domain_id3f9kQ02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology420 — Nucleotidyltransferase; domain 5
Homologous superfamily homologous superfamily10 — Ribonuclease H-like superfamily/Ribonuclease H
Domain ID domain_id3f9kR01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily200 — Integrase, N-terminal zinc-binding domain
Domain ID domain_id3f9kR02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology420 — Nucleotidyltransferase; domain 5
Homologous superfamily homologous superfamily10 — Ribonuclease H-like superfamily/Ribonuclease H
Domain ID domain_id3f9kS00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology930 — Transcription Elongation Factor S-II; Chain A
Homologous superfamily homologous superfamily10 — Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
Domain ID domain_id3f9kU01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily200 — Integrase, N-terminal zinc-binding domain
Domain ID domain_id3f9kU02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology420 — Nucleotidyltransferase; domain 5
Homologous superfamily homologous superfamily10 — Ribonuclease H-like superfamily/Ribonuclease H
Domain ID domain_id3f9kV01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily200 — Integrase, N-terminal zinc-binding domain
Domain ID domain_id3f9kV02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology420 — Nucleotidyltransferase; domain 5
Homologous superfamily homologous superfamily10 — Ribonuclease H-like superfamily/Ribonuclease H
Domain ID domain_id3f9kW00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology930 — Transcription Elongation Factor S-II; Chain A
Homologous superfamily homologous superfamily10 — Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
Domain ID domain_id3f9kY01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily200 — Integrase, N-terminal zinc-binding domain
Domain ID domain_id3f9kY02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology420 — Nucleotidyltransferase; domain 5
Homologous superfamily homologous superfamily10 — Ribonuclease H-like superfamily/Ribonuclease H
Domain ID domain_id3f9kZ01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily200 — Integrase, N-terminal zinc-binding domain
Domain ID domain_id3f9kZ02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology420 — Nucleotidyltransferase; domain 5
Homologous superfamily homologous superfamily10 — Ribonuclease H-like superfamily/Ribonuclease H
Domain ID domain_id3f9ka00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology930 — Transcription Elongation Factor S-II; Chain A
Homologous superfamily homologous superfamily10 — Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
Domain ID domain_id3f9kc01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily200 — Integrase, N-terminal zinc-binding domain
Domain ID domain_id3f9kc02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology420 — Nucleotidyltransferase; domain 5
Homologous superfamily homologous superfamily10 — Ribonuclease H-like superfamily/Ribonuclease H
Domain ID domain_id3f9kd01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily200 — Integrase, N-terminal zinc-binding domain
Domain ID domain_id3f9kd02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology420 — Nucleotidyltransferase; domain 5
Homologous superfamily homologous superfamily10 — Ribonuclease H-like superfamily/Ribonuclease H
Domain ID domain_id3f9ke00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology930 — Transcription Elongation Factor S-II; Chain A
Homologous superfamily homologous superfamily10 — Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
Domain ID domain_id3f9kg01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily200 — Integrase, N-terminal zinc-binding domain
Domain ID domain_id3f9kg02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology420 — Nucleotidyltransferase; domain 5
Homologous superfamily homologous superfamily10 — Ribonuclease H-like superfamily/Ribonuclease H
Domain ID domain_id3f9kh01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily200 — Integrase, N-terminal zinc-binding domain
Domain ID domain_id3f9kh02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology420 — Nucleotidyltransferase; domain 5
Homologous superfamily homologous superfamily10 — Ribonuclease H-like superfamily/Ribonuclease H
Domain ID domain_id3f9ki00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology930 — Transcription Elongation Factor S-II; Chain A
Homologous superfamily homologous superfamily10 — Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
Domain ID domain_id3f9kk01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily200 — Integrase, N-terminal zinc-binding domain
Domain ID domain_id3f9kk02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology420 — Nucleotidyltransferase; domain 5
Homologous superfamily homologous superfamily10 — Ribonuclease H-like superfamily/Ribonuclease H
Domain ID domain_id3f9kl01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily200 — Integrase, N-terminal zinc-binding domain
Domain ID domain_id3f9kl02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology420 — Nucleotidyltransferase; domain 5
Homologous superfamily homologous superfamily10 — Ribonuclease H-like superfamily/Ribonuclease H
Domain ID domain_id3f9km00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology930 — Transcription Elongation Factor S-II; Chain A
Homologous superfamily homologous superfamily10 — Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
Domain ID domain_id3f9ko01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily200 — Integrase, N-terminal zinc-binding domain
Domain ID domain_id3f9ko02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology420 — Nucleotidyltransferase; domain 5
Homologous superfamily homologous superfamily10 — Ribonuclease H-like superfamily/Ribonuclease H
Domain ID domain_id3f9kp01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily200 — Integrase, N-terminal zinc-binding domain
Domain ID domain_id3f9kp02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology420 — Nucleotidyltransferase; domain 5
Homologous superfamily homologous superfamily10 — Ribonuclease H-like superfamily/Ribonuclease H
Domain ID domain_id3f9kq00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology930 — Transcription Elongation Factor S-II; Chain A
Homologous superfamily homologous superfamily10 — Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
Domain ID domain_id3f9ks01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily200 — Integrase, N-terminal zinc-binding domain
Domain ID domain_id3f9ks02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology420 — Nucleotidyltransferase; domain 5
Homologous superfamily homologous superfamily10 — Ribonuclease H-like superfamily/Ribonuclease H
Domain ID domain_id3f9kt01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily200 — Integrase, N-terminal zinc-binding domain
Domain ID domain_id3f9kt02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology420 — Nucleotidyltransferase; domain 5
Homologous superfamily homologous superfamily10 — Ribonuclease H-like superfamily/Ribonuclease H
Domain ID domain_id3f9ku00
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology930 — Transcription Elongation Factor S-II; Chain A
Homologous superfamily homologous superfamily10 — Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
▶

7. Citations (1)