3i4n

8-oxoguanine containing RNA polymerase II elongation complex E

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

DNA-directed RNA polymerase II subunit RPB1

OrganismNot specified

UniProt P04050

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 12 DNA 2 RNA 1 DNA-directed RNA polymerase II subunit RPB2 × 1 (P08518) DNA-directed RNA polymerase II subunit RPB3 × 1 (P16370) DNA-directed RNA polymerase II subunit RPB4 × 1 (P20433) DNA-directed RNA polymerases I, II, and III subunit RPABC1 × 1 (P20434) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (P20435) DNA-directed RNA polymerase II subunit RPB7 × 1 (P34087) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (P20436) DNA-directed RNA polymerase II subunit RPB9 × 1 (P27999) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (P22139) DNA-directed RNA polymerase II subunit RPB11 × 1 (P38902) DNA-directed RNA polymerases I, II, and III subunit RPABC4 × 1 (P40422) ;DNA (5'-D(*AP*G*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*AP*(8OG)P*GP*CP*CP*(BRU)P*GP*GP*TP*CP*AP*TP*T)-3') ; × 1 ;DNA (5'-D(*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*T)-3') ; × 1 ;RNA (5'-R(*UP*GP*CP*AP*UP*C*UP*UP*CP*CP*AP*GP*GP*CP*AP*U)-3') ; × 1 MAGNESIUM ION × 1 ZINC ION × 8 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPB1_YEAST
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–1733; UniProt 1–1733

DNA-directed RNA polymerase II subunit RPB2

OrganismNot specified

UniProt P08518

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 12 DNA 2 RNA 1 DNA-directed RNA polymerase II subunit RPB1 × 1 (P04050) DNA-directed RNA polymerase II subunit RPB3 × 1 (P16370) DNA-directed RNA polymerase II subunit RPB4 × 1 (P20433) DNA-directed RNA polymerases I, II, and III subunit RPABC1 × 1 (P20434) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (P20435) DNA-directed RNA polymerase II subunit RPB7 × 1 (P34087) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (P20436) DNA-directed RNA polymerase II subunit RPB9 × 1 (P27999) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (P22139) DNA-directed RNA polymerase II subunit RPB11 × 1 (P38902) DNA-directed RNA polymerases I, II, and III subunit RPABC4 × 1 (P40422) ;DNA (5'-D(*AP*G*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*AP*(8OG)P*GP*CP*CP*(BRU)P*GP*GP*TP*CP*AP*TP*T)-3') ; × 1 ;DNA (5'-D(*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*T)-3') ; × 1 ;RNA (5'-R(*UP*GP*CP*AP*UP*C*UP*UP*CP*CP*AP*GP*GP*CP*AP*U)-3') ; × 1 MAGNESIUM ION × 1 ZINC ION × 8 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPB2_YEAST
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–1224; UniProt 1–1224

DNA-directed RNA polymerase II subunit RPB3

OrganismNot specified

UniProt P16370

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 12 DNA 2 RNA 1 DNA-directed RNA polymerase II subunit RPB1 × 1 (P04050) DNA-directed RNA polymerase II subunit RPB2 × 1 (P08518) DNA-directed RNA polymerase II subunit RPB4 × 1 (P20433) DNA-directed RNA polymerases I, II, and III subunit RPABC1 × 1 (P20434) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (P20435) DNA-directed RNA polymerase II subunit RPB7 × 1 (P34087) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (P20436) DNA-directed RNA polymerase II subunit RPB9 × 1 (P27999) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (P22139) DNA-directed RNA polymerase II subunit RPB11 × 1 (P38902) DNA-directed RNA polymerases I, II, and III subunit RPABC4 × 1 (P40422) ;DNA (5'-D(*AP*G*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*AP*(8OG)P*GP*CP*CP*(BRU)P*GP*GP*TP*CP*AP*TP*T)-3') ; × 1 ;DNA (5'-D(*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*T)-3') ; × 1 ;RNA (5'-R(*UP*GP*CP*AP*UP*C*UP*UP*CP*CP*AP*GP*GP*CP*AP*U)-3') ; × 1 MAGNESIUM ION × 1 ZINC ION × 8 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPB3_YEAST
Isoform —
PDB entities 3
Chains and sequence ranges Author chain C; PDBConstruct 7–324; UniProt 1–318

DNA-directed RNA polymerase II subunit RPB4

OrganismNot specified

UniProt P20433

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 12 DNA 2 RNA 1 DNA-directed RNA polymerase II subunit RPB1 × 1 (P04050) DNA-directed RNA polymerase II subunit RPB2 × 1 (P08518) DNA-directed RNA polymerase II subunit RPB3 × 1 (P16370) DNA-directed RNA polymerases I, II, and III subunit RPABC1 × 1 (P20434) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (P20435) DNA-directed RNA polymerase II subunit RPB7 × 1 (P34087) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (P20436) DNA-directed RNA polymerase II subunit RPB9 × 1 (P27999) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (P22139) DNA-directed RNA polymerase II subunit RPB11 × 1 (P38902) DNA-directed RNA polymerases I, II, and III subunit RPABC4 × 1 (P40422) ;DNA (5'-D(*AP*G*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*AP*(8OG)P*GP*CP*CP*(BRU)P*GP*GP*TP*CP*AP*TP*T)-3') ; × 1 ;DNA (5'-D(*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*T)-3') ; × 1 ;RNA (5'-R(*UP*GP*CP*AP*UP*C*UP*UP*CP*CP*AP*GP*GP*CP*AP*U)-3') ; × 1 MAGNESIUM ION × 1 ZINC ION × 8 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPB4_YEAST
Isoform —
PDB entities 4
Chains and sequence ranges Author chain D; PDBConstruct 1–221; UniProt 1–221

DNA-directed RNA polymerases I, II, and III subunit RPABC1

OrganismNot specified

UniProt P20434

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 12 DNA 2 RNA 1 DNA-directed RNA polymerase II subunit RPB1 × 1 (P04050) DNA-directed RNA polymerase II subunit RPB2 × 1 (P08518) DNA-directed RNA polymerase II subunit RPB3 × 1 (P16370) DNA-directed RNA polymerase II subunit RPB4 × 1 (P20433) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (P20435) DNA-directed RNA polymerase II subunit RPB7 × 1 (P34087) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (P20436) DNA-directed RNA polymerase II subunit RPB9 × 1 (P27999) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (P22139) DNA-directed RNA polymerase II subunit RPB11 × 1 (P38902) DNA-directed RNA polymerases I, II, and III subunit RPABC4 × 1 (P40422) ;DNA (5'-D(*AP*G*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*AP*(8OG)P*GP*CP*CP*(BRU)P*GP*GP*TP*CP*AP*TP*T)-3') ; × 1 ;DNA (5'-D(*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*T)-3') ; × 1 ;RNA (5'-R(*UP*GP*CP*AP*UP*C*UP*UP*CP*CP*AP*GP*GP*CP*AP*U)-3') ; × 1 MAGNESIUM ION × 1 ZINC ION × 8 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPAB1_YEAST
Isoform —
PDB entities 5
Chains and sequence ranges Author chain E; PDBConstruct 1–215; UniProt 1–215

DNA-directed RNA polymerases I, II, and III subunit RPABC2

OrganismNot specified

UniProt P20435

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 12 DNA 2 RNA 1 DNA-directed RNA polymerase II subunit RPB1 × 1 (P04050) DNA-directed RNA polymerase II subunit RPB2 × 1 (P08518) DNA-directed RNA polymerase II subunit RPB3 × 1 (P16370) DNA-directed RNA polymerase II subunit RPB4 × 1 (P20433) DNA-directed RNA polymerases I, II, and III subunit RPABC1 × 1 (P20434) DNA-directed RNA polymerase II subunit RPB7 × 1 (P34087) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (P20436) DNA-directed RNA polymerase II subunit RPB9 × 1 (P27999) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (P22139) DNA-directed RNA polymerase II subunit RPB11 × 1 (P38902) DNA-directed RNA polymerases I, II, and III subunit RPABC4 × 1 (P40422) ;DNA (5'-D(*AP*G*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*AP*(8OG)P*GP*CP*CP*(BRU)P*GP*GP*TP*CP*AP*TP*T)-3') ; × 1 ;DNA (5'-D(*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*T)-3') ; × 1 ;RNA (5'-R(*UP*GP*CP*AP*UP*C*UP*UP*CP*CP*AP*GP*GP*CP*AP*U)-3') ; × 1 MAGNESIUM ION × 1 ZINC ION × 8 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPAB2_YEAST
Isoform —
PDB entities 6
Chains and sequence ranges Author chain F; PDBConstruct 1–155; UniProt 1–155

DNA-directed RNA polymerase II subunit RPB7

OrganismNot specified

UniProt P34087

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 12 DNA 2 RNA 1 DNA-directed RNA polymerase II subunit RPB1 × 1 (P04050) DNA-directed RNA polymerase II subunit RPB2 × 1 (P08518) DNA-directed RNA polymerase II subunit RPB3 × 1 (P16370) DNA-directed RNA polymerase II subunit RPB4 × 1 (P20433) DNA-directed RNA polymerases I, II, and III subunit RPABC1 × 1 (P20434) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (P20435) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (P20436) DNA-directed RNA polymerase II subunit RPB9 × 1 (P27999) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (P22139) DNA-directed RNA polymerase II subunit RPB11 × 1 (P38902) DNA-directed RNA polymerases I, II, and III subunit RPABC4 × 1 (P40422) ;DNA (5'-D(*AP*G*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*AP*(8OG)P*GP*CP*CP*(BRU)P*GP*GP*TP*CP*AP*TP*T)-3') ; × 1 ;DNA (5'-D(*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*T)-3') ; × 1 ;RNA (5'-R(*UP*GP*CP*AP*UP*C*UP*UP*CP*CP*AP*GP*GP*CP*AP*U)-3') ; × 1 MAGNESIUM ION × 1 ZINC ION × 8 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPB7_YEAST
Isoform —
PDB entities 7
Chains and sequence ranges Author chain G; PDBConstruct 1–171; UniProt 1–171

DNA-directed RNA polymerases I, II, and III subunit RPABC3

OrganismNot specified

UniProt P20436

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 12 DNA 2 RNA 1 DNA-directed RNA polymerase II subunit RPB1 × 1 (P04050) DNA-directed RNA polymerase II subunit RPB2 × 1 (P08518) DNA-directed RNA polymerase II subunit RPB3 × 1 (P16370) DNA-directed RNA polymerase II subunit RPB4 × 1 (P20433) DNA-directed RNA polymerases I, II, and III subunit RPABC1 × 1 (P20434) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (P20435) DNA-directed RNA polymerase II subunit RPB7 × 1 (P34087) DNA-directed RNA polymerase II subunit RPB9 × 1 (P27999) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (P22139) DNA-directed RNA polymerase II subunit RPB11 × 1 (P38902) DNA-directed RNA polymerases I, II, and III subunit RPABC4 × 1 (P40422) ;DNA (5'-D(*AP*G*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*AP*(8OG)P*GP*CP*CP*(BRU)P*GP*GP*TP*CP*AP*TP*T)-3') ; × 1 ;DNA (5'-D(*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*T)-3') ; × 1 ;RNA (5'-R(*UP*GP*CP*AP*UP*C*UP*UP*CP*CP*AP*GP*GP*CP*AP*U)-3') ; × 1 MAGNESIUM ION × 1 ZINC ION × 8 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPAB3_YEAST
Isoform —
PDB entities 8
Chains and sequence ranges Author chain H; PDBConstruct 1–146; UniProt 1–146

DNA-directed RNA polymerase II subunit RPB9

OrganismNot specified

UniProt P27999

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 12 DNA 2 RNA 1 DNA-directed RNA polymerase II subunit RPB1 × 1 (P04050) DNA-directed RNA polymerase II subunit RPB2 × 1 (P08518) DNA-directed RNA polymerase II subunit RPB3 × 1 (P16370) DNA-directed RNA polymerase II subunit RPB4 × 1 (P20433) DNA-directed RNA polymerases I, II, and III subunit RPABC1 × 1 (P20434) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (P20435) DNA-directed RNA polymerase II subunit RPB7 × 1 (P34087) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (P20436) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (P22139) DNA-directed RNA polymerase II subunit RPB11 × 1 (P38902) DNA-directed RNA polymerases I, II, and III subunit RPABC4 × 1 (P40422) ;DNA (5'-D(*AP*G*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*AP*(8OG)P*GP*CP*CP*(BRU)P*GP*GP*TP*CP*AP*TP*T)-3') ; × 1 ;DNA (5'-D(*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*T)-3') ; × 1 ;RNA (5'-R(*UP*GP*CP*AP*UP*C*UP*UP*CP*CP*AP*GP*GP*CP*AP*U)-3') ; × 1 MAGNESIUM ION × 1 ZINC ION × 8 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPB9_YEAST
Isoform —
PDB entities 9
Chains and sequence ranges Author chain I; PDBConstruct 1–122; UniProt 1–122

DNA-directed RNA polymerases I, II, and III subunit RPABC5

OrganismNot specified

UniProt P22139

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 12 DNA 2 RNA 1 DNA-directed RNA polymerase II subunit RPB1 × 1 (P04050) DNA-directed RNA polymerase II subunit RPB2 × 1 (P08518) DNA-directed RNA polymerase II subunit RPB3 × 1 (P16370) DNA-directed RNA polymerase II subunit RPB4 × 1 (P20433) DNA-directed RNA polymerases I, II, and III subunit RPABC1 × 1 (P20434) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (P20435) DNA-directed RNA polymerase II subunit RPB7 × 1 (P34087) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (P20436) DNA-directed RNA polymerase II subunit RPB9 × 1 (P27999) DNA-directed RNA polymerase II subunit RPB11 × 1 (P38902) DNA-directed RNA polymerases I, II, and III subunit RPABC4 × 1 (P40422) ;DNA (5'-D(*AP*G*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*AP*(8OG)P*GP*CP*CP*(BRU)P*GP*GP*TP*CP*AP*TP*T)-3') ; × 1 ;DNA (5'-D(*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*T)-3') ; × 1 ;RNA (5'-R(*UP*GP*CP*AP*UP*C*UP*UP*CP*CP*AP*GP*GP*CP*AP*U)-3') ; × 1 MAGNESIUM ION × 1 ZINC ION × 8 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPAB5_YEAST
Isoform —
PDB entities 10
Chains and sequence ranges Author chain J; PDBConstruct 1–70; UniProt 1–70

DNA-directed RNA polymerase II subunit RPB11

OrganismNot specified

UniProt P38902

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 12 DNA 2 RNA 1 DNA-directed RNA polymerase II subunit RPB1 × 1 (P04050) DNA-directed RNA polymerase II subunit RPB2 × 1 (P08518) DNA-directed RNA polymerase II subunit RPB3 × 1 (P16370) DNA-directed RNA polymerase II subunit RPB4 × 1 (P20433) DNA-directed RNA polymerases I, II, and III subunit RPABC1 × 1 (P20434) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (P20435) DNA-directed RNA polymerase II subunit RPB7 × 1 (P34087) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (P20436) DNA-directed RNA polymerase II subunit RPB9 × 1 (P27999) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (P22139) DNA-directed RNA polymerases I, II, and III subunit RPABC4 × 1 (P40422) ;DNA (5'-D(*AP*G*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*AP*(8OG)P*GP*CP*CP*(BRU)P*GP*GP*TP*CP*AP*TP*T)-3') ; × 1 ;DNA (5'-D(*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*T)-3') ; × 1 ;RNA (5'-R(*UP*GP*CP*AP*UP*C*UP*UP*CP*CP*AP*GP*GP*CP*AP*U)-3') ; × 1 MAGNESIUM ION × 1 ZINC ION × 8 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPB11_YEAST
Isoform —
PDB entities 11
Chains and sequence ranges Author chain K; PDBConstruct 1–120; UniProt 1–120

DNA-directed RNA polymerases I, II, and III subunit RPABC4

OrganismNot specified

UniProt P40422

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 12 DNA 2 RNA 1 DNA-directed RNA polymerase II subunit RPB1 × 1 (P04050) DNA-directed RNA polymerase II subunit RPB2 × 1 (P08518) DNA-directed RNA polymerase II subunit RPB3 × 1 (P16370) DNA-directed RNA polymerase II subunit RPB4 × 1 (P20433) DNA-directed RNA polymerases I, II, and III subunit RPABC1 × 1 (P20434) DNA-directed RNA polymerases I, II, and III subunit RPABC2 × 1 (P20435) DNA-directed RNA polymerase II subunit RPB7 × 1 (P34087) DNA-directed RNA polymerases I, II, and III subunit RPABC3 × 1 (P20436) DNA-directed RNA polymerase II subunit RPB9 × 1 (P27999) DNA-directed RNA polymerases I, II, and III subunit RPABC5 × 1 (P22139) DNA-directed RNA polymerase II subunit RPB11 × 1 (P38902) ;DNA (5'-D(*AP*G*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*AP*(8OG)P*GP*CP*CP*(BRU)P*GP*GP*TP*CP*AP*TP*T)-3') ; × 1 ;DNA (5'-D(*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*T)-3') ; × 1 ;RNA (5'-R(*UP*GP*CP*AP*UP*C*UP*UP*CP*CP*AP*GP*GP*CP*AP*U)-3') ; × 1 MAGNESIUM ION × 1 ZINC ION × 8 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPAB4_YEAST
Isoform —
PDB entities 12
Chains and sequence ranges Author chain L; PDBConstruct 1–70; UniProt 1–70

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id3i4n
Deposition date deposition_date2009-07-02
Structure title title8-oxoguanine containing RNA polymerase II elongation complex E
Keywords keywords;RNA POLYMERASE II, METAL-BINDING, TRANSCRIPTION BUBBLE, ELONGATION COMPLEX, TRANSCRIPTION, 8-OXOGUANINE, DNA DAMAGE, OXIDATIVE DAMAGE, DNA-binding, DNA-directed RNA polymerase, Isopeptide bond, Magnesium, Nucleotidyltransferase, Nucleus, Phosphoprotein, Transferase, Zinc-finger, DNA repair, mRNA processing, TRANSFERASE-DNA-RNA HYBRID COMPLEX ;; TRANSCRIPTION,TRANSFERASE/DNA-RNA HYBRID
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

3i4n__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

3i4n__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

3i4n__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)50.63 Å
Rg (electron density)50.46 Å
Total Rg50.65 Å
Atom count32307
Residues4000
Excluded volume573730 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 3i4n__assembly_1__model_1 pentadecameric (15) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (17)

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6. Fold Classification (SCOP + CATH) 21 domains

CATH v4.4 (21 domains)

Domain ID domain_id3i4nA01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology274 — Enzyme I; Chain A, domain 2
Homologous superfamily homologous superfamily100 — RNA polymerase Rpb1, domain 3
Domain ID domain_id3i4nA02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1360 — Gyrase A; domain 2
Homologous superfamily homologous superfamily140 —
Domain ID domain_id3i4nB04
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology1110 — Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3
Homologous superfamily homologous superfamily10 — RNA polymerase Rpb2, domain 2
Domain ID domain_id3i4nB05
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology1070 — Hypothetical Protein Ta0175; Chain: A, domain 2
Homologous superfamily homologous superfamily20 —
Domain ID domain_id3i4nB06
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology270 — Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6
Homologous superfamily homologous superfamily10 — DNA-directed RNA polymerase, subunit 2, domain 6
Domain ID domain_id3i4nB07
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology50 — OB fold (Dihydrolipoamide Acetyltransferase, E2P)
Homologous superfamily homologous superfamily150 — RNA polymerase II, Rpb2 subunit, wall domain
Domain ID domain_id3i4nB08
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology1800 — DCoH-like
Homologous superfamily homologous superfamily10 — RNA polymerase alpha subunit dimerisation domain
Domain ID domain_id3i4nC01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1360 — Gyrase A; domain 2
Homologous superfamily homologous superfamily10 — RNA polymerase, RBP11-like subunit
Domain ID domain_id3i4nC02
Class class2 — Mainly Beta
Architecture architecture170 — Beta Complex
Topology topology120 — RNA Polymerase Alpha Subunit; Chain A, domain 2
Homologous superfamily homologous superfamily12 — DNA-directed RNA polymerase, insert domain
Domain ID domain_id3i4nD02
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1250 — Growth Hormone; Chain: A;
Homologous superfamily homologous superfamily40 — RNA Polymerase II, Rpb4 subunit
Domain ID domain_id3i4nE01
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology1340 — Dna-directed Rna Polymerases I, Ii, And Iii 27 Kd Polypeptide; Chain: A; domain 1
Homologous superfamily homologous superfamily10 — RNA polymerase, Rpb5, N-terminal domain
Domain ID domain_id3i4nE02
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology940 — Eukaryotic RPB6 RNA polymerase subunit
Homologous superfamily homologous superfamily20 — RPB5-like RNA polymerase subunit
Domain ID domain_id3i4nF00
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology940 — Eukaryotic RPB6 RNA polymerase subunit
Homologous superfamily homologous superfamily10 — RNA polymerase subunit, RPB6/omega
Domain ID domain_id3i4nG01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1490 — Dna Ligase; domain 1
Homologous superfamily homologous superfamily120 — RNA polymerase Rpb7-like, N-terminal domain
Domain ID domain_id3i4nG02
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology50 — OB fold (Dihydrolipoamide Acetyltransferase, E2P)
Homologous superfamily homologous superfamily140 — Nucleic acid-binding proteins
Domain ID domain_id3i4nH00
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology50 — OB fold (Dihydrolipoamide Acetyltransferase, E2P)
Homologous superfamily homologous superfamily140 — Nucleic acid-binding proteins
Domain ID domain_id3i4nI01
Class class2 — Mainly Beta
Architecture architecture20 — Single Sheet
Topology topology25 — N-terminal domain of TfIIb
Homologous superfamily homologous superfamily10 —
Domain ID domain_id3i4nI02
Class class2 — Mainly Beta
Architecture architecture20 — Single Sheet
Topology topology25 — N-terminal domain of TfIIb
Homologous superfamily homologous superfamily10 —
Domain ID domain_id3i4nJ00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology10 — Arc Repressor Mutant, subunit A
Homologous superfamily homologous superfamily60 — Homeodomain-like
Domain ID domain_id3i4nK00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1360 — Gyrase A; domain 2
Homologous superfamily homologous superfamily10 — RNA polymerase, RBP11-like subunit
Domain ID domain_id3i4nL00
Class class2 — Mainly Beta
Architecture architecture20 — Single Sheet
Topology topology28 — Rubrerythrin, domain 2
Homologous superfamily homologous superfamily30 — RNA polymerase ii, chain L
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7. Citations (1)