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3j1s

Structure of adeno-associated virus-2 in complex with neutralizing monoclonal antibody A20

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Capsid protein VP1

OrganismNot specified

UniProt P03135

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 180 A20 light chain × 60 A20 heavy chain × 60 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 3 A20 light chain × 1 A20 heavy chain × 1 Consistent with protein count
3 Protein heterocomplex Heteromer Protein 15 A20 light chain × 5 A20 heavy chain × 5 Consistent with protein count
4 Protein heterocomplex Heteromer Protein 18 A20 light chain × 6 A20 heavy chain × 6 Consistent with protein count
5 Protein heterocomplex Heteromer Protein 3 A20 light chain × 1 A20 heavy chain × 1 Consistent with protein count

Other States of the Same Protein in the Database

Monomer
1lp3 1lp3 6ih9 6ih9

4 assemblies

Homodimer

None

Homotetramer

None

Other homooligomers
1lp3 1lp3 1lp3 1lp3 5ipi 5ipk 6cbe 6e9d 6ih9 6ih9 6ih9 6u0r

20 assemblies; showing the first 12

Heteromeric or nucleic-acid complex
3j1s 3j1s 3j1s 3j1s 3j1s 6ihb 6ihb 6ihb 6ihb 6ihb 6nz0 6nz0

15 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name CAPSD_AAV2S
Isoform —
PDB entities 3
Chains and sequence ranges Author chain A； PDBConstruct 1–519； UniProt 217–735

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id3j1s
Deposition date deposition_date2012-05-23
Structure title titleStructure of adeno-associated virus-2 in complex with neutralizing monoclonal antibody A20
Keywords keywordsEpitope, Fab, gene therapy, VIRUS-IMMUNE SYSTEM complex; VIRUS/IMMUNE SYSTEM
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

3j1s__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

3j1s__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 1011 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

3j1s__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）0.00 Å
Rg (electron density)130.70 Å
Total Rg131.20 Å
Atom count449100
Residues57060
Excluded volume7868800 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 3j1s__assembly_1__model_1 180-meric （180） Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 3j1s__assembly_2__model_1 trimeric （3） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
3 1 3j1s__assembly_3__model_1 pentadecameric （15） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
4 1 3j1s__assembly_4__model_1 octadecameric （18） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
5 1 3j1s__assembly_5__model_1 trimeric （3） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (3)

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7. Citations (1)