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6u0r

Cryo-EM structure of the chimeric vector AAV2.7m8

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Capsid protein VP1

Adeno-associated virus - 2

UniProt P03135

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein homooligomer Homooligomer Protein 60 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE × 60 Consistent with protein count

Other States of the Same Protein in the Database

Monomer
1lp3 1lp3 6ih9 6ih9

4 assemblies

Homodimer

None

Homotetramer

None

Other homooligomers
1lp3 1lp3 1lp3 1lp3 5ipi 5ipk 6cbe 6e9d 6ih9 6ih9 6ih9 6u0r

20 assemblies; showing the first 12

Heteromeric or nucleic-acid complex
3j1s 3j1s 3j1s 3j1s 3j1s 6ihb 6ihb 6ihb 6ihb 6ihb 6nz0 6nz0

15 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name CAPSD_AAV2S
Isoform P03135-3
PDB entities 1
Chains and sequence ranges Author chain 1； PDBConstruct 1–527； UniProt 17–533 Author chain 2； PDBConstruct 1–527； UniProt 17–533 Author chain 3； PDBConstruct 1–527； UniProt 17–533 Author chain 4； PDBConstruct 1–527； UniProt 17–533 Author chain 5； PDBConstruct 1–527； UniProt 17–533 Author chain 6； PDBConstruct 1–527； UniProt 17–533 Author chain 7； PDBConstruct 1–527； UniProt 17–533 Author chain 8； PDBConstruct 1–527； UniProt 17–533 Author chain A； PDBConstruct 1–527； UniProt 17–533 Author chain B； PDBConstruct 1–527； UniProt 17–533 Author chain C； PDBConstruct 1–527； UniProt 17–533 Author chain D； PDBConstruct 1–527； UniProt 17–533 Author chain E； PDBConstruct 1–527； UniProt 17–533 Author chain F； PDBConstruct 1–527； UniProt 17–533 Author chain G； PDBConstruct 1–527； UniProt 17–533 Author chain H； PDBConstruct 1–527； UniProt 17–533 Author chain I； PDBConstruct 1–527； UniProt 17–533 Author chain J； PDBConstruct 1–527； UniProt 17–533 Author chain K； PDBConstruct 1–527； UniProt 17–533 Author chain L； PDBConstruct 1–527； UniProt 17–533 Author chain M； PDBConstruct 1–527； UniProt 17–533 Author chain N； PDBConstruct 1–527； UniProt 17–533 Author chain O； PDBConstruct 1–527； UniProt 17–533 Author chain P； PDBConstruct 1–527； UniProt 17–533 Author chain Q； PDBConstruct 1–527； UniProt 17–533 Author chain R； PDBConstruct 1–527； UniProt 17–533 Author chain S； PDBConstruct 1–527； UniProt 17–533 Author chain T； PDBConstruct 1–527； UniProt 17–533 Author chain U； PDBConstruct 1–527； UniProt 17–533 Author chain V； PDBConstruct 1–527； UniProt 17–533 Author chain W； PDBConstruct 1–527； UniProt 17–533 Author chain X； PDBConstruct 1–527； UniProt 17–533 Author chain Y； PDBConstruct 1–527； UniProt 17–533 Author chain Z； PDBConstruct 1–527； UniProt 17–533 Author chain a； PDBConstruct 1–527； UniProt 17–533 Author chain b； PDBConstruct 1–527； UniProt 17–533 Author chain c； PDBConstruct 1–527； UniProt 17–533 Author chain d； PDBConstruct 1–527； UniProt 17–533 Author chain e； PDBConstruct 1–527； UniProt 17–533 Author chain f； PDBConstruct 1–527； UniProt 17–533 Author chain g； PDBConstruct 1–527； UniProt 17–533 Author chain h； PDBConstruct 1–527； UniProt 17–533 Author chain i； PDBConstruct 1–527； UniProt 17–533 Author chain j； PDBConstruct 1–527； UniProt 17–533 Author chain k； PDBConstruct 1–527； UniProt 17–533 Author chain l； PDBConstruct 1–527； UniProt 17–533 Author chain m； PDBConstruct 1–527； UniProt 17–533 Author chain n； PDBConstruct 1–527； UniProt 17–533 Author chain o； PDBConstruct 1–527； UniProt 17–533 Author chain p； PDBConstruct 1–527； UniProt 17–533 Author chain q； PDBConstruct 1–527； UniProt 17–533 Author chain r； PDBConstruct 1–527； UniProt 17–533 Author chain s； PDBConstruct 1–527； UniProt 17–533 Author chain t； PDBConstruct 1–527； UniProt 17–533 Author chain u； PDBConstruct 1–527； UniProt 17–533 Author chain v； PDBConstruct 1–527； UniProt 17–533 Author chain w； PDBConstruct 1–527； UniProt 17–533 Author chain x； PDBConstruct 1–527； UniProt 17–533 Author chain y； PDBConstruct 1–527； UniProt 17–533 Author chain z； PDBConstruct 1–527； UniProt 17–533

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id6u0r
Deposition date deposition_date2019-08-14
Structure title titleCryo-EM structure of the chimeric vector AAV2.7m8
Keywords keywordsProtrusion, insertion, receptor, VIRUS; VIRUS
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6u0r__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6u0r__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 1011 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6u0r__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）0.00 Å
Rg (electron density)110.20 Å
Total Rg110.50 Å
Atom count254100
Residues31620
Excluded volume4435300 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6u0r__assembly_1__model_1 60-meric （60） Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (2)

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7. Citations (1)