← Back to search
6e9d

Sub-2 Angstrom Ewald Curvature-Corrected Single-Particle Cryo-EM Reconstruction of AAV-2 L336C

Method: ELECTRON MICROSCOPY
▼

1. Protein Identity and Related Structures Protein Identity & Related Structures

Capsid protein VP1

Adeno-associated virus 2 Srivastava/1982

UniProt P03135

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein homooligomer Homooligomer Protein 60 water × 60 Consistent with protein count

Other States of the Same Protein in the Database

Monomer
1lp3 1lp3 6ih9 6ih9

4 assemblies

Homodimer

None

Homotetramer

None

Other homooligomers
1lp3 1lp3 1lp3 1lp3 5ipi 5ipk 6cbe 6e9d 6ih9 6ih9 6ih9 6u0r

20 assemblies; showing the first 12

Heteromeric or nucleic-acid complex
3j1s 3j1s 3j1s 3j1s 3j1s 6ihb 6ihb 6ihb 6ihb 6ihb 6nz0 6nz0

15 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name CAPSD_AAV2S
Isoform —
PDB entities 1
Chains and sequence ranges Author chain 1； PDBConstruct 1–735； UniProt 1–735 Author chain 2； PDBConstruct 1–735； UniProt 1–735 Author chain 3； PDBConstruct 1–735； UniProt 1–735 Author chain 4； PDBConstruct 1–735； UniProt 1–735 Author chain 5； PDBConstruct 1–735； UniProt 1–735 Author chain 6； PDBConstruct 1–735； UniProt 1–735 Author chain 7； PDBConstruct 1–735； UniProt 1–735 Author chain 8； PDBConstruct 1–735； UniProt 1–735 Author chain A； PDBConstruct 1–735； UniProt 1–735 Author chain B； PDBConstruct 1–735； UniProt 1–735 Author chain C； PDBConstruct 1–735； UniProt 1–735 Author chain D； PDBConstruct 1–735； UniProt 1–735 Author chain E； PDBConstruct 1–735； UniProt 1–735 Author chain F； PDBConstruct 1–735； UniProt 1–735 Author chain G； PDBConstruct 1–735； UniProt 1–735 Author chain H； PDBConstruct 1–735； UniProt 1–735 Author chain I； PDBConstruct 1–735； UniProt 1–735 Author chain J； PDBConstruct 1–735； UniProt 1–735 Author chain K； PDBConstruct 1–735； UniProt 1–735 Author chain L； PDBConstruct 1–735； UniProt 1–735 Author chain M； PDBConstruct 1–735； UniProt 1–735 Author chain N； PDBConstruct 1–735； UniProt 1–735 Author chain O； PDBConstruct 1–735； UniProt 1–735 Author chain P； PDBConstruct 1–735； UniProt 1–735 Author chain Q； PDBConstruct 1–735； UniProt 1–735 Author chain R； PDBConstruct 1–735； UniProt 1–735 Author chain S； PDBConstruct 1–735； UniProt 1–735 Author chain T； PDBConstruct 1–735； UniProt 1–735 Author chain U； PDBConstruct 1–735； UniProt 1–735 Author chain V； PDBConstruct 1–735； UniProt 1–735 Author chain W； PDBConstruct 1–735； UniProt 1–735 Author chain X； PDBConstruct 1–735； UniProt 1–735 Author chain Y； PDBConstruct 1–735； UniProt 1–735 Author chain Z； PDBConstruct 1–735； UniProt 1–735 Author chain a； PDBConstruct 1–735； UniProt 1–735 Author chain b； PDBConstruct 1–735； UniProt 1–735 Author chain c； PDBConstruct 1–735； UniProt 1–735 Author chain d； PDBConstruct 1–735； UniProt 1–735 Author chain e； PDBConstruct 1–735； UniProt 1–735 Author chain f； PDBConstruct 1–735； UniProt 1–735 Author chain g； PDBConstruct 1–735； UniProt 1–735 Author chain h； PDBConstruct 1–735； UniProt 1–735 Author chain i； PDBConstruct 1–735； UniProt 1–735 Author chain j； PDBConstruct 1–735； UniProt 1–735 Author chain k； PDBConstruct 1–735； UniProt 1–735 Author chain l； PDBConstruct 1–735； UniProt 1–735 Author chain m； PDBConstruct 1–735； UniProt 1–735 Author chain n； PDBConstruct 1–735； UniProt 1–735 Author chain o； PDBConstruct 1–735； UniProt 1–735 Author chain p； PDBConstruct 1–735； UniProt 1–735 Author chain q； PDBConstruct 1–735； UniProt 1–735 Author chain r； PDBConstruct 1–735； UniProt 1–735 Author chain s； PDBConstruct 1–735； UniProt 1–735 Author chain t； PDBConstruct 1–735； UniProt 1–735 Author chain u； PDBConstruct 1–735； UniProt 1–735 Author chain v； PDBConstruct 1–735； UniProt 1–735 Author chain w； PDBConstruct 1–735； UniProt 1–735 Author chain x； PDBConstruct 1–735； UniProt 1–735 Author chain y； PDBConstruct 1–735； UniProt 1–735 Author chain z； PDBConstruct 1–735； UniProt 1–735

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

▼

2. Structure Basics 2. Structure Basics

Entry ID entry_id6e9d
Deposition date deposition_date2018-07-31
Structure title titleSub-2 Angstrom Ewald Curvature-Corrected Single-Particle Cryo-EM Reconstruction of AAV-2 L336C
Keywords keywordsAAV-2 L336C, Gene therapy, Ewald sphere curvature correction, Per particle CTF, VIRUS LIKE PARTICLE; VIRUS LIKE PARTICLE
Experimental Method methodELECTRON MICROSCOPY
▼

3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6e9d__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6e9d__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 1011 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6e9d__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）0.00 Å
Rg (electron density)109.00 Å
Total Rg109.30 Å
Atom count478080
Residues30600
Excluded volume4296400 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6e9d__assembly_1__model_1 60-meric （60） Success 4.1.3-1-20251215 (887e7ef) View Download
▶

4. Crystallography and Experiment 4. Crystallography & Experiment

▶

5. Entities and Polymers Entities & Polymers (2)

▶

7. Citations (1)