4bp7

Asymmetric structure of a virus-receptor complex

Method: ELECTRON MICROSCOPY Dmax: 273.1 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

COAT PROTEIN

OrganismNot specified

UniProt P03612

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 180 PDB declaration: 180-meric(180) Consistent with protein copy count Chain A0; UniProt 2–130 Chain A1; UniProt 2–130 Chain A2; UniProt 2–130 Chain A3; UniProt 2–130 Chain A4; UniProt 2–130 Chain A5; UniProt 2–130 Chain A6; UniProt 2–130 Chain A7; UniProt 2–130 Chain A8; UniProt 2–130 Chain A9; UniProt 2–130 Chain AA; UniProt 2–130 Chain AB; UniProt 2–130 Chain AC; UniProt 2–130 Chain AD; UniProt 2–130 Chain AE; UniProt 2–130 Chain AF; UniProt 2–130 Chain AG; UniProt 2–130 Chain AH; UniProt 2–130 Chain AI; UniProt 2–130 Chain AJ; UniProt 2–130 Chain AK; UniProt 2–130 Chain AL; UniProt 2–130 Chain AM; UniProt 2–130 Chain AN; UniProt 2–130 Chain AO; UniProt 2–130 Chain AP; UniProt 2–130 Chain AQ; UniProt 2–130 Chain AR; UniProt 2–130 Chain AS; UniProt 2–130 Chain AT; UniProt 2–130 Chain AU; UniProt 2–130 Chain AV; UniProt 2–130 Chain AW; UniProt 2–130 Chain AX; UniProt 2–130 Chain AY; UniProt 2–130 Chain AZ; UniProt 2–130 Chain Aa; UniProt 2–130 Chain Ab; UniProt 2–130 Chain Ac; UniProt 2–130 Chain Ad; UniProt 2–130 Chain Ae; UniProt 2–130 Chain Af; UniProt 2–130 Chain Ag; UniProt 2–130 Chain Ah; UniProt 2–130 Chain Ai; UniProt 2–130 Chain Aj; UniProt 2–130 Chain Ak; UniProt 2–130 Chain Al; UniProt 2–130 Chain Am; UniProt 2–130 Chain An; UniProt 2–130 Chain Ao; UniProt 2–130 Chain Ap; UniProt 2–130 Chain Aq; UniProt 2–130 Chain Ar; UniProt 2–130 Chain As; UniProt 2–130 Chain At; UniProt 2–130 Chain Au; UniProt 2–130 Chain Av; UniProt 2–130 Chain Aw; UniProt 2–130 Chain Ax; UniProt 2–130 Chain B0; UniProt 2–130 Chain B1; UniProt 2–130 Chain B2; UniProt 2–130 Chain B3; UniProt 2–130 Chain B4; UniProt 2–130 Chain B5; UniProt 2–130 Chain B6; UniProt 2–130 Chain B7; UniProt 2–130 Chain B8; UniProt 2–130 Chain B9; UniProt 2–130 Chain BA; UniProt 2–130 Chain BB; UniProt 2–130 Chain BC; UniProt 2–130 Chain BD; UniProt 2–130 Chain BE; UniProt 2–130 Chain BF; UniProt 2–130 Chain BG; UniProt 2–130 Chain BH; UniProt 2–130 Chain BI; UniProt 2–130 Chain BJ; UniProt 2–130 Chain BK; UniProt 2–130 Chain BL; UniProt 2–130 Chain BM; UniProt 2–130 Chain BN; UniProt 2–130 Chain BO; UniProt 2–130 Chain BP; UniProt 2–130 Chain BQ; UniProt 2–130 Chain BR; UniProt 2–130 Chain BS; UniProt 2–130 Chain BT; UniProt 2–130 Chain BU; UniProt 2–130 Chain BV; UniProt 2–130 Chain BW; UniProt 2–130 Chain BX; UniProt 2–130 Chain BY; UniProt 2–130 Chain BZ; UniProt 2–130 Chain Ba; UniProt 2–130 Chain Bb; UniProt 2–130 Chain Bc; UniProt 2–130 Chain Bd; UniProt 2–130 Chain Be; UniProt 2–130 Chain Bf; UniProt 2–130 Chain Bg; UniProt 2–130 Chain Bh; UniProt 2–130 Chain Bi; UniProt 2–130 Chain Bj; UniProt 2–130 Chain Bk; UniProt 2–130 Chain Bl; UniProt 2–130 Chain Bm; UniProt 2–130 Chain Bn; UniProt 2–130 Chain Bo; UniProt 2–130 Chain Bp; UniProt 2–130 Chain Bq; UniProt 2–130 Chain Br; UniProt 2–130 Chain Bs; UniProt 2–130 Chain Bt; UniProt 2–130 Chain Bu; UniProt 2–130 Chain Bv; UniProt 2–130 Chain Bw; UniProt 2–130 Chain Bx; UniProt 2–130 Chain C0; UniProt 2–130 Chain C1; UniProt 2–130 Chain C2; UniProt 2–130 Chain C3; UniProt 2–130 Chain C4; UniProt 2–130 Chain C5; UniProt 2–130 Chain C6; UniProt 2–130 Chain C7; UniProt 2–130 Chain C8; UniProt 2–130 Chain C9; UniProt 2–130 Chain CA; UniProt 2–130 Chain CB; UniProt 2–130 Chain CC; UniProt 2–130 Chain CD; UniProt 2–130 Chain CE; UniProt 2–130 Chain CF; UniProt 2–130 Chain CG; UniProt 2–130 Chain CH; UniProt 2–130 Chain CI; UniProt 2–130 Chain CJ; UniProt 2–130 Chain CK; UniProt 2–130 Chain CL; UniProt 2–130 Chain CM; UniProt 2–130 Chain CN; UniProt 2–130 Chain CO; UniProt 2–130 Chain CP; UniProt 2–130 Chain CQ; UniProt 2–130 Chain CR; UniProt 2–130 Chain CS; UniProt 2–130 Chain CT; UniProt 2–130 Chain CU; UniProt 2–130 Chain CV; UniProt 2–130 Chain CW; UniProt 2–130 Chain CX; UniProt 2–130 Chain CY; UniProt 2–130 Chain CZ; UniProt 2–130 Chain Ca; UniProt 2–130 Chain Cb; UniProt 2–130 Chain Cc; UniProt 2–130 Chain Cd; UniProt 2–130 Chain Ce; UniProt 2–130 Chain Cf; UniProt 2–130 Chain Cg; UniProt 2–130 Chain Ch; UniProt 2–130 Chain Ci; UniProt 2–130 Chain Cj; UniProt 2–130 Chain Ck; UniProt 2–130 Chain Cl; UniProt 2–130 Chain Cm; UniProt 2–130 Chain Cn; UniProt 2–130 Chain Co; UniProt 2–130 Chain Cp; UniProt 2–130 Chain Cq; UniProt 2–130 Chain Cr; UniProt 2–130 Chain Cs; UniProt 2–130 Chain Ct; UniProt 2–130 Chain Cu; UniProt 2–130 Chain Cv; UniProt 2–130 Chain Cw; UniProt 2–130 Chain Cx; UniProt 2–130 Not recorded No other associated polymer ELECTRON MICROSCOPY cryo-EM vitrification conditions:Cryogen ETHANE;LIQUID ETHANE HOME MADE FREEZING DEVICE Resolution 39.00 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

43 other PDB entries and 208 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name COAT_BPMS2
Isoform
PDB entities 1
Chains and sequence ranges Author chain A0; PDBConstruct 1–129; UniProt 2–130 Author chain A1; PDBConstruct 1–129; UniProt 2–130 Author chain A2; PDBConstruct 1–129; UniProt 2–130 Author chain A3; PDBConstruct 1–129; UniProt 2–130 Author chain A4; PDBConstruct 1–129; UniProt 2–130 Author chain A5; PDBConstruct 1–129; UniProt 2–130 Author chain A6; PDBConstruct 1–129; UniProt 2–130 Author chain A7; PDBConstruct 1–129; UniProt 2–130 Author chain A8; PDBConstruct 1–129; UniProt 2–130 Author chain A9; PDBConstruct 1–129; UniProt 2–130 Author chain AA; PDBConstruct 1–129; UniProt 2–130 Author chain AB; PDBConstruct 1–129; UniProt 2–130 Author chain AC; PDBConstruct 1–129; UniProt 2–130 Author chain AD; PDBConstruct 1–129; UniProt 2–130 Author chain AE; PDBConstruct 1–129; UniProt 2–130 Author chain AF; PDBConstruct 1–129; UniProt 2–130 Author chain AG; PDBConstruct 1–129; UniProt 2–130 Author chain AH; PDBConstruct 1–129; UniProt 2–130 Author chain AI; PDBConstruct 1–129; UniProt 2–130 Author chain AJ; PDBConstruct 1–129; UniProt 2–130 Author chain AK; PDBConstruct 1–129; UniProt 2–130 Author chain AL; PDBConstruct 1–129; UniProt 2–130 Author chain AM; PDBConstruct 1–129; UniProt 2–130 Author chain AN; PDBConstruct 1–129; UniProt 2–130 Author chain AO; PDBConstruct 1–129; UniProt 2–130 Author chain AP; PDBConstruct 1–129; UniProt 2–130 Author chain AQ; PDBConstruct 1–129; UniProt 2–130 Author chain AR; PDBConstruct 1–129; UniProt 2–130 Author chain AS; PDBConstruct 1–129; UniProt 2–130 Author chain AT; PDBConstruct 1–129; UniProt 2–130 Author chain AU; PDBConstruct 1–129; UniProt 2–130 Author chain AV; PDBConstruct 1–129; UniProt 2–130 Author chain AW; PDBConstruct 1–129; UniProt 2–130 Author chain AX; PDBConstruct 1–129; UniProt 2–130 Author chain AY; PDBConstruct 1–129; UniProt 2–130 Author chain AZ; PDBConstruct 1–129; UniProt 2–130 Author chain Aa; PDBConstruct 1–129; UniProt 2–130 Author chain Ab; PDBConstruct 1–129; UniProt 2–130 Author chain Ac; PDBConstruct 1–129; UniProt 2–130 Author chain Ad; PDBConstruct 1–129; UniProt 2–130 Author chain Ae; PDBConstruct 1–129; UniProt 2–130 Author chain Af; PDBConstruct 1–129; UniProt 2–130 Author chain Ag; PDBConstruct 1–129; UniProt 2–130 Author chain Ah; PDBConstruct 1–129; UniProt 2–130 Author chain Ai; PDBConstruct 1–129; UniProt 2–130 Author chain Aj; PDBConstruct 1–129; UniProt 2–130 Author chain Ak; PDBConstruct 1–129; UniProt 2–130 Author chain Al; PDBConstruct 1–129; UniProt 2–130 Author chain Am; PDBConstruct 1–129; UniProt 2–130 Author chain An; PDBConstruct 1–129; UniProt 2–130 Author chain Ao; PDBConstruct 1–129; UniProt 2–130 Author chain Ap; PDBConstruct 1–129; UniProt 2–130 Author chain Aq; PDBConstruct 1–129; UniProt 2–130 Author chain Ar; PDBConstruct 1–129; UniProt 2–130 Author chain As; PDBConstruct 1–129; UniProt 2–130 Author chain At; PDBConstruct 1–129; UniProt 2–130 Author chain Au; PDBConstruct 1–129; UniProt 2–130 Author chain Av; PDBConstruct 1–129; UniProt 2–130 Author chain Aw; PDBConstruct 1–129; UniProt 2–130 Author chain Ax; PDBConstruct 1–129; UniProt 2–130 Author chain B0; PDBConstruct 1–129; UniProt 2–130 Author chain B1; PDBConstruct 1–129; UniProt 2–130 Author chain B2; PDBConstruct 1–129; UniProt 2–130 Author chain B3; PDBConstruct 1–129; UniProt 2–130 Author chain B4; PDBConstruct 1–129; UniProt 2–130 Author chain B5; PDBConstruct 1–129; UniProt 2–130 Author chain B6; PDBConstruct 1–129; UniProt 2–130 Author chain B7; PDBConstruct 1–129; UniProt 2–130 Author chain B8; PDBConstruct 1–129; UniProt 2–130 Author chain B9; PDBConstruct 1–129; UniProt 2–130 Author chain BA; PDBConstruct 1–129; UniProt 2–130 Author chain BB; PDBConstruct 1–129; UniProt 2–130 Author chain BC; PDBConstruct 1–129; UniProt 2–130 Author chain BD; PDBConstruct 1–129; UniProt 2–130 Author chain BE; PDBConstruct 1–129; UniProt 2–130 Author chain BF; PDBConstruct 1–129; UniProt 2–130 Author chain BG; PDBConstruct 1–129; UniProt 2–130 Author chain BH; PDBConstruct 1–129; UniProt 2–130 Author chain BI; PDBConstruct 1–129; UniProt 2–130 Author chain BJ; PDBConstruct 1–129; UniProt 2–130 Author chain BK; PDBConstruct 1–129; UniProt 2–130 Author chain BL; PDBConstruct 1–129; UniProt 2–130 Author chain BM; PDBConstruct 1–129; UniProt 2–130 Author chain BN; PDBConstruct 1–129; UniProt 2–130 Author chain BO; PDBConstruct 1–129; UniProt 2–130 Author chain BP; PDBConstruct 1–129; UniProt 2–130 Author chain BQ; PDBConstruct 1–129; UniProt 2–130 Author chain BR; PDBConstruct 1–129; UniProt 2–130 Author chain BS; PDBConstruct 1–129; UniProt 2–130 Author chain BT; PDBConstruct 1–129; UniProt 2–130 Author chain BU; PDBConstruct 1–129; UniProt 2–130 Author chain BV; PDBConstruct 1–129; UniProt 2–130 Author chain BW; PDBConstruct 1–129; UniProt 2–130 Author chain BX; PDBConstruct 1–129; UniProt 2–130 Author chain BY; PDBConstruct 1–129; UniProt 2–130 Author chain BZ; PDBConstruct 1–129; UniProt 2–130 Author chain Ba; PDBConstruct 1–129; UniProt 2–130 Author chain Bb; PDBConstruct 1–129; UniProt 2–130 Author chain Bc; PDBConstruct 1–129; UniProt 2–130 Author chain Bd; PDBConstruct 1–129; UniProt 2–130 Author chain Be; PDBConstruct 1–129; UniProt 2–130 Author chain Bf; PDBConstruct 1–129; UniProt 2–130 Author chain Bg; PDBConstruct 1–129; UniProt 2–130 Author chain Bh; PDBConstruct 1–129; UniProt 2–130 Author chain Bi; PDBConstruct 1–129; UniProt 2–130 Author chain Bj; PDBConstruct 1–129; UniProt 2–130 Author chain Bk; PDBConstruct 1–129; UniProt 2–130 Author chain Bl; PDBConstruct 1–129; UniProt 2–130 Author chain Bm; PDBConstruct 1–129; UniProt 2–130 Author chain Bn; PDBConstruct 1–129; UniProt 2–130 Author chain Bo; PDBConstruct 1–129; UniProt 2–130 Author chain Bp; PDBConstruct 1–129; UniProt 2–130 Author chain Bq; PDBConstruct 1–129; UniProt 2–130 Author chain Br; PDBConstruct 1–129; UniProt 2–130 Author chain Bs; PDBConstruct 1–129; UniProt 2–130 Author chain Bt; PDBConstruct 1–129; UniProt 2–130 Author chain Bu; PDBConstruct 1–129; UniProt 2–130 Author chain Bv; PDBConstruct 1–129; UniProt 2–130 Author chain Bw; PDBConstruct 1–129; UniProt 2–130 Author chain Bx; PDBConstruct 1–129; UniProt 2–130 Author chain C0; PDBConstruct 1–129; UniProt 2–130 Author chain C1; PDBConstruct 1–129; UniProt 2–130 Author chain C2; PDBConstruct 1–129; UniProt 2–130 Author chain C3; PDBConstruct 1–129; UniProt 2–130 Author chain C4; PDBConstruct 1–129; UniProt 2–130 Author chain C5; PDBConstruct 1–129; UniProt 2–130 Author chain C6; PDBConstruct 1–129; UniProt 2–130 Author chain C7; PDBConstruct 1–129; UniProt 2–130 Author chain C8; PDBConstruct 1–129; UniProt 2–130 Author chain C9; PDBConstruct 1–129; UniProt 2–130 Author chain CA; PDBConstruct 1–129; UniProt 2–130 Author chain CB; PDBConstruct 1–129; UniProt 2–130 Author chain CC; PDBConstruct 1–129; UniProt 2–130 Author chain CD; PDBConstruct 1–129; UniProt 2–130 Author chain CE; PDBConstruct 1–129; UniProt 2–130 Author chain CF; PDBConstruct 1–129; UniProt 2–130 Author chain CG; PDBConstruct 1–129; UniProt 2–130 Author chain CH; PDBConstruct 1–129; UniProt 2–130 Author chain CI; PDBConstruct 1–129; UniProt 2–130 Author chain CJ; PDBConstruct 1–129; UniProt 2–130 Author chain CK; PDBConstruct 1–129; UniProt 2–130 Author chain CL; PDBConstruct 1–129; UniProt 2–130 Author chain CM; PDBConstruct 1–129; UniProt 2–130 Author chain CN; PDBConstruct 1–129; UniProt 2–130 Author chain CO; PDBConstruct 1–129; UniProt 2–130 Author chain CP; PDBConstruct 1–129; UniProt 2–130 Author chain CQ; PDBConstruct 1–129; UniProt 2–130 Author chain CR; PDBConstruct 1–129; UniProt 2–130 Author chain CS; PDBConstruct 1–129; UniProt 2–130 Author chain CT; PDBConstruct 1–129; UniProt 2–130 Author chain CU; PDBConstruct 1–129; UniProt 2–130 Author chain CV; PDBConstruct 1–129; UniProt 2–130 Author chain CW; PDBConstruct 1–129; UniProt 2–130 Author chain CX; PDBConstruct 1–129; UniProt 2–130 Author chain CY; PDBConstruct 1–129; UniProt 2–130 Author chain CZ; PDBConstruct 1–129; UniProt 2–130 Author chain Ca; PDBConstruct 1–129; UniProt 2–130 Author chain Cb; PDBConstruct 1–129; UniProt 2–130 Author chain Cc; PDBConstruct 1–129; UniProt 2–130 Author chain Cd; PDBConstruct 1–129; UniProt 2–130 Author chain Ce; PDBConstruct 1–129; UniProt 2–130 Author chain Cf; PDBConstruct 1–129; UniProt 2–130 Author chain Cg; PDBConstruct 1–129; UniProt 2–130 Author chain Ch; PDBConstruct 1–129; UniProt 2–130 Author chain Ci; PDBConstruct 1–129; UniProt 2–130 Author chain Cj; PDBConstruct 1–129; UniProt 2–130 Author chain Ck; PDBConstruct 1–129; UniProt 2–130 Author chain Cl; PDBConstruct 1–129; UniProt 2–130 Author chain Cm; PDBConstruct 1–129; UniProt 2–130 Author chain Cn; PDBConstruct 1–129; UniProt 2–130 Author chain Co; PDBConstruct 1–129; UniProt 2–130 Author chain Cp; PDBConstruct 1–129; UniProt 2–130 Author chain Cq; PDBConstruct 1–129; UniProt 2–130 Author chain Cr; PDBConstruct 1–129; UniProt 2–130 Author chain Cs; PDBConstruct 1–129; UniProt 2–130 Author chain Ct; PDBConstruct 1–129; UniProt 2–130 Author chain Cu; PDBConstruct 1–129; UniProt 2–130 Author chain Cv; PDBConstruct 1–129; UniProt 2–130 Author chain Cw; PDBConstruct 1–129; UniProt 2–130 Author chain Cx; PDBConstruct 1–129; UniProt 2–130

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 4bp7

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 4bp7
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2. Structure Basics 2. Structure Basics

Entry ID entry_id4bp7
Deposition date deposition_date2013-05-23
Structure title titleAsymmetric structure of a virus-receptor complex
Keywords keywordsVIRUS, BACTERIOPHAGE; VIRUS
Experimental Method methodELECTRON MICROSCOPY

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier
Radius of gyration Rg (electron density) rg_electron122.20
Forward intensity I(0) i084108500000.00
Molecular weight molecular_weight2471300.0 kDa
Excluded volume excluded_volume3090400 ų
Envelope volume envelope_volume9182200 ų
Hydration-shell volume shell_volume645900 ų
Envelope diameter envelope_diameter290.2
Shell Rg shell_rg133.10
Envelope Rg envelope_rg101.70
Shape Rg shape_rg122.20
Total Rg total_rg122.20
Total atoms total_atoms173700
Residues n_residues23220
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax273.1
Rg (real space) rg_real123.00
Rg uncertainty (real space) rg_real_error0.16
I(0) (real space) i0_real8.4450e+10
I(0) uncertainty (real space) i0_real_error1.1910e+09
Rg (reciprocal space) rg_reciprocal141.00
I(0) (reciprocal space) i0_reciprocal90520000000.0000
Solution quality estimate total_estimate0.8040
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary210.1
Skewness Skewness skewness-0.500
Kurtosis Kurtosis kurtosis-0.609
Angular range angular_range— – 0.0650 −1
Current regularization parameter α current_alpha1.0700
Highest regularization parameter α highest_alpha119800000000.0000
Real-space data points n_real_points14
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.849; Stabil: 0.968; Sysdev: 1.000; Positv: 1.000; Valcen: 0.001; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (1)

8. Citations (1)

9. Files and Curves (10)